Sinocyclocheilus rhinocerous: 107757074
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Entry
107757074 CDS
T04916
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107757074 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107757074 (patl1)
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107757074 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
107757074 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
nSTAND1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
107757074
NCBI-ProteinID:
XP_016429942
UniProt:
A0A673I810
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MFHFQSFDDDCTLEEEGLVEEDEIDQFNDDTFGAGAINDDWQEEHARLAELDEQVRDGVH
GTGDASSVDLPLAGGNAHSSTLPQPSSSSRLYPDIDERGGGDLAESLTRLILGSDPAIAG
VGTARSDRSHLPLMLSCQAPQPSALAEQSSLLLSYQQQQQLMRRGPAPLPQINSHSIWEN
SMGFGPVSSGLVTQKEDKTLMSIIKEVGLPNRPPGLSREEGRDLSERVPPPRSCSPVIGS
PPVRAVPIGTPPKQPMSQVHNQQNNHPSAVHVRATVPLRYPPPFTERLSPNNLLSIANSP
LSHPPFPAGVGSVLSQIQRAQLLNSQVGQFPRGPAPPLLQGGVGGFRPFFGQSGPRMGPH
GPPLGHTLIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRRNRDPYSNLMTQREK
EWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTY
RPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLL
LEVQDFEKKFLQTPEHQRDALLEQHKTHTVQLYNSLREKEWDDRVSDEQCLMIMSVRKGK
RLISRLLPFLPQPQAATVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSMSSTSLTN
LLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRE
LLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcaatgatgat
tggcaggaggagcatgcccgcctcgcagagcttgatgagcaggtacgagacggagtgcat
ggaacgggcgacgcctcctccgttgacctccctctcgctggcggcaatgcccactcttcg
accctccctcaaccctcctcttcttcccgactttaccctgacatagatgaacggggtggc
ggtgacctggcggagtcgctgactcggctcatcttgggctcggatcctgctattgctgga
gtgggcaccgccaggtcggaccgatctcaccttcctctaatgctgtcctgccaggctcct
cagccctcggcattagctgaacagtcttctctgctgctgagctaccaacaacagcagcag
ctcatgcgcagagggccagctcctcttccacagataaactctcacagtatttgggaaaac
agtatgggcttcggtcctgttagttctggactagtcactcaaaaagaggacaaaacgctt
atgtccattatcaaagaggtggggcttcctaatcggcctcctggactcagcagagaagaa
gggcgagatttgtccgaaagggttccacctcctcgctcctgctcacctgtgattggaagt
ccacctgtaagggctgtacctattggaacacctccaaaacagcccatgagtcaagtccac
aatcagcagaataatcacccttcagccgttcacgtgagagccactgtgccactgcgctac
ccacctcccttcactgagcgtctgtcccccaacaacctcctcagcatcgctaactcaccg
ttgtctcatcctccattccctgctggtgttggttctgttctgtctcagatacagagagcc
caactgctcaactctcaggttggtcagttcccacgtggtccagctcccccattattacag
ggaggtgtcgggggtttcaggccattctttgggcagtctggtcctagaatgggtccccat
gggccacctcttggccacacactcatccgacacaacaccactcacctccacccgcagcac
cgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtcggagggaga
ggtgttggagacaggagaaacagagatccttacagcaatctgatgacacaaagagagaag
gaatgggtagcgaggatccaaatgatgcaacttcaaagcaccgatccgtatctggatgac
tactattaccagaattactatgaaaaaatggagaagcgtcaagagcgggacagagacaac
aggaaggagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacctat
cggccagtgcagtttgccggctcgttaggaaaactcactgtctccagtgtgaacaatccg
aggaaaatgattgatgccgtggtgaccactcgcagtgatgatgaggaaaaaagagaaaag
caagtgtggaacaaaagacggcaaatcctttatactgtggagaagatgtacagtctacta
ttagaagtgcaagactttgagaagaagttcttgcagacccctgagcaccaaagagatgcc
ctgctagaacagcataaaacccacacggtgcagctctacaactccctccgagaaaaagag
tgggacgaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgtaaggggaaa
cgcctcatctccagactcctccccttcctgccacagccccaggctgctactgttgtcatg
ggaatagccaggaaccttccagctctggccaagaaagacaaacaagaccaggtactgtgt
tggttggtagagccagtgacggcagtaatccagtccatgtcgagtacctccctcactaat
ctccttcaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaataagttt
ggcgtgacgttgctctatctgattctaagtgaaggagagaggatgcagagctccgatccc
aactgtcagctcatggacgataaccgctggactgagttggtgttctctgtgacacgggag
cttttgaaggtcccgtcctctgcgctttcatccccgctgtttactcctccaaacctagtg
tcactgttctctcgatatgtggaccggcagagactcgagctcttgcaggagaagctacag
tga
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