Sinocyclocheilus rhinocerous: 107757340
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Entry
107757340 CDS
T04916
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107757340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107757340
03041 Spliceosome [BR:
srx03041
]
107757340
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107757340
Spliceosome [BR:
srx03041
]
Complex B
Other components
Prp19-related factors
107757340
Complex C
107757340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_2
HAT_Syf1_CNRKL1_N
TPR_12
TPR_8
Suf
TPR_19
ARM_TT21_C
TPR_15
ARM_TT21
TPR_16
TPR_1
Tcf25
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
107757340
NCBI-ProteinID:
XP_016430268
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MQNVHIFSCKIQLQLWHELCDLISQNPDKVTSLKVGAIIRGGLTRFTDQLGKLWCSLADY
YIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELGQDEDGDI
DLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGQPRQIINTYTEAVQTI
DPLKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELR
HENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKA
VYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGIALFRWPNVHDIWNTYLTKFI
DRYGGKKLERARDLFEQALDRCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEP
EEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRAR
AIYSYCSQICDPRVTAHFWQTWKEFEVRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQM
LKATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQDKPKPKDKILFVRSDTSRSELAEL
AKQANPDEIDIDDEDEDAEDGEPDEVQLEQKSVPTAVFGGLKDD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgtacatattttttcttgtaaaattcaattacagctctggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaaagtgggagcgattatccga
ggaggcctcactcgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagttatgcgcagtttgaggagagc
atgatcgctgccaagatggagaccacgtctgaactgggacaagatgaagatggtgacatt
gacttggagttacgattggcccgttttgagttgctgataactcgacggccacttttactg
aacagtgtgctgctgcgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcgacagattatcaacacatacacagaagctgtgcaaacgata
gatcctttgaaagccacaggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcaattccagcaaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtttataagtccctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggattgccactcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctctttaggtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatc
gaccgttatggaggcaagaagctggagagagctcgcgatctgtttgagcaagcgctggat
cggtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaacaacatcagatgttcaacatctacatcaaacgtgcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcctgcgctttgcggacatggagagcaaacttggggagattgacagagcgaga
gccatctattcctactgctcacagatctgtgatccaagggtgaccgctcatttctggcaa
acatggaaggagtttgaggtacgccatggtaatgaggacaccatccgcgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggctactggaacagtgtcagatcttgctcctgggcagagcggagtggatgacatg
aagctgctggagcagaaggctcaacagctcgctgcagaggctgagcaggacaaacccaaa
cctaaagacaagatcctcttcgtcaggagtgacacctctcgcagtgaacttgccgaactg
gccaaacaagctaatccagatgagattgacattgatgatgaagatgaggatgcagaggat
ggggaaccagatgaggtgcagttggagcagaagtctgtccctactgctgtcttcggagga
ctaaaggatgactga
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