Sinocyclocheilus rhinocerous: 107757601
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Entry
107757601 CDS
T04916
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03030
DNA replication
srx03410
Base excision repair
srx03420
Nucleotide excision repair
srx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107757601
03410 Base excision repair
107757601
03420 Nucleotide excision repair
107757601
03430 Mismatch repair
107757601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srx03032
]
107757601
03400 DNA repair and recombination proteins [BR:
srx03400
]
107757601
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107757601
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107757601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_33
AAA_7
AAA_5
AAA_30
AAA_17
Rad17
AAA_16
RuvB_N
AAA_14
BRCT_2
AAA_18
nSTAND3
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
107757601
NCBI-ProteinID:
XP_016430607
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MDIRRFFAPSKPAAPKPSNGSTSTDEEQKKKQKSNTKVKSPTSDEKPSGKRKKRVIIDSD
SEEEKKKEKKTKKSAKETDAPTAKKHPVTYVSDSDSDDTFMTLKKTKRKENGTAKGKKES
DSGKAKQAKVSSSKSPTKSPNTVSKGAAKSSQPTVSPKVAPTPPKQMPTSVMAFFGSSSV
QRSEKKMVASTSTKRKAPTQETEESLSDEAIAKQLQMDEDMELEKKIHDDEEFARTLAML
DEAPLPKKARVDSVSPSKSSASTSDTKPKKDPSPKKSPVKTSSKLAQMKRRQEEEEEQRK
KNRGEKQMKISPKKEPISPTSSERAATPKTASVSTGMTNSRNFSTPKSDDAPSKNSPTKP
ENKSPEDLEKKRPNSSAFRNYLNREGPRALGSKDIPQGAENCLEGCVFVLTGVLESMERD
DAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESFGTKIINEDELLNLIRTKPG
KKSKYEIAAEAENKSSKARTPDSRDKHTPPSKKATPQGPSPNKRSPSEGKSKPGSASKPG
TLGASRSEVEKSLSFDRTKRASPVSHSTPENEGSSLLWVDKYCPRSLKNLIGQQGDQSCA
NKLLRWLQNWHKHHSGSTKAPSKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEEL
GYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNE
DRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAF
KEGLKIPPPALNEVILASNHDIRQVLHNLSMWSAKDKVMTYDQAKADANNARKDMKLGPF
DVCRKVFASGEESAHMTXDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSK
TADSICDGDLVDKRIRSRQAWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAG
KHSRIIQELASHMSLKTLSSKEAINLDYLPYLRSAVLEPLQSQGSEGANQSVQLMDDYDL
IKEDVDNMMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDP
ELIGELNGESQFQEEEEDNGVTADAMIKQKKAKPAKDVKQEKPGASGKGKGRGKGKGKAV
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttttttgcgcccagcaaacctgcggcacccaaaccttcaaatgga
agcaccagcactgatgaagagcagaagaagaaacagaaatcaaacactaaggtcaagagt
cccacatctgatgaaaaaccctctggaaaacgaaagaaaagagtcataattgattcagac
tctgaggaagagaaaaagaaggagaagaagaccaaaaagagcgctaaagagaccgacgcc
cctacagcgaagaaacacccagtaacttacgtgtctgattctgattcggatgatacgttt
atgactctgaaaaagaccaaacgaaaagaaaatggaactgctaaaggcaagaaagaatca
gattcaggaaaagcaaaacaagcaaaagtctcttccagtaaatccccaaccaagtcccca
aacacagtctcaaagggagcggcgaagagctctcagcccaccgtctccccaaaggtggca
ccgaccccaccaaaacagatgcccacctcagtaatggccttctttgggagctcaagtgtt
cagaggtcagagaagaaaatggtggccagtaccagcactaagaggaaggcacccacacaa
gaaactgaagagtcgctcagtgatgaagccattgcaaaacaacttcagatggatgaagac
atggagttggaaaagaagatccatgatgatgaggaatttgcaagaacattagccatgctg
gatgaagctcccttaccgaaaaaggctcgggtggactctgtctccccatctaagagcagc
gcaagtacctcagacaccaaacccaaaaaggacccgtcccctaaaaaaagtcccgtgaag
accagctccaaactggctcagatgaaaaggcgacaggaagaagaggaagagcaaaggaag
aaaaacaggggtgaaaaacaaatgaagatttctcctaagaaagagcccatctctccaact
agctcagagcgagcagctacgcccaaaactgcaagcgtttccacaggaatgacaaattca
aggaatttttccacccctaaaagtgacgatgcacccagtaaaaactcaccaacaaaacca
gagaataaaagtcctgaggacctagagaaaaaacggccaaattcatcagccttccgtaac
tatttgaacagagaaggaccacgagctctggggtctaaagatatcccgcagggagcagag
aactgcctggagggttgtgtgtttgtgttgactggtgtgttagagtctatggagagggat
gacgctaagtcactaatagagcgatatggcgggaaagtcacaggaaacgtcagccgtaaa
accacttaccttgttctgggacgagacagcggggcctcaaagactgagaaggcggagagt
tttggtactaagatcataaatgaagatgagctgttgaacctcataagaaccaaaccaggc
aagaagtctaaatacgagattgcggcggaggcagagaataaatcctctaaagcaaggact
ccagactctagagacaaacacactcctccatccaagaaggccacaccacaagggcccagc
cccaacaagagaagcccttcagaggggaagtctaagcctggctctgcttctaaacctgga
acacttggcgcctctcgttcagaggttgaaaagagtttgagctttgatcgaaccaagaga
gcatcccctgtatcccactctacccctgagaatgaggggagcagcctgttgtgggtggat
aagtactgtccccgtagtctgaagaacctgattgggcagcagggggatcagagttgtgct
aacaagcttctacgttggttacagaactggcataaacatcacagcggcagtacaaaagca
ccatccaaattcggtaagtttgggagtaaagatgacggttctggatttaaggctgcattg
ttatctgggcctcctggtgttgggaagaccactactgctgctctcgtctgtgaggagttg
ggttacagctacgtggagatgaatgcgagctgcacccgcagtaagaacagcttgaaggaa
gtgatcgcagagtcactcaacaacaccagcattaagaacttctatactggtgcatctcag
acggtgagcagtaaacatgtcctcataatggacgaggtggacgggatggcaggaaatgaa
gaccgaggaggaatacaggagatgattggtctgataaaacagtctaagattcccatcatc
tgcatgtgcaatgaccgcaatcatcagaagatccgctcgctggccaactactgctacgac
ctgaggtttcagagaccccgcgttgaacagatcaagggggctatgatgtctatagctttc
aaagagggtctgaagatcccacccccggcgcttaatgaagtcatcctggcgtccaatcat
gatattcgtcaggtactgcataatctaagcatgtggtcagctaaagacaaagtcatgacc
tatgaccaggccaaagctgatgctaacaatgctaggaaggacatgaaactgggtccattt
gatgtgtgtcggaaagtgtttgcttcaggagaggaaagcgcccacatgactnttgacaaa
tcagaccttttcttccatgattactctttagcaccactatttgttcaggaaaactacctg
catgtccgaccagccgctgcagggggaaatctgaagaatcatttggtgttgttgagtaaa
acagcggacagcatttgcgatggagatttagtggacaaacggatccgctccagacaggca
tggtctctgcttcccacacaggcgatttatgcgagcgtgttgccgggggaactgatgcgg
ggttatatgagtcagtttccgacctttcccagctggttgggcaagttctcgtcagctggc
aaacacagccgcatcatacaggagctcgcttcgcacatgagcctaaagacgttaagcagt
aaggaagcaataaatctggattacctgccgtatttgcgctcagcagtattagagcctctt
cagtcgcagggttcagagggagccaatcagagcgtgcagctcatggatgattatgacctt
atcaaagaggatgttgataacatgatggagatcagcacgtggggcggacagccggatcct
tactctaaactggactccaaggtgaaagctgcgtttacaagagcctacaataaggaatcc
catcttacgccgtactctttacaagtggttaagaaaagccgtaaaggtgctgttgacccc
gagcttataggagagcttaacggtgaatctcagtttcaggaagaggaagaagacaatggg
gttaccgcagatgcaatgataaagcagaagaaagccaaaccagcaaaagacgtcaagcaa
gagaaaccaggggcttctgggaaggggaaaggcaggggtaaaggaaagggaaaggcagtg
aactga
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