KEGG   Serratia plymuthica S13: M621_01555
Entry
M621_01555        CDS       T02716                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
sry  Serratia plymuthica S13
Pathway
sry02024  Quorum sensing
sry03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sry00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M621_01555 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    M621_01555 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sry03019]
    M621_01555 (hfq)
   03036 Chromosome and associated proteins [BR:sry03036]
    M621_01555 (hfq)
Messenger RNA biogenesis [BR:sry03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     M621_01555 (hfq)
Chromosome and associated proteins [BR:sry03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    M621_01555 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AGP42693
UniProt: S4YIJ9
LinkDB
Position
340070..340378
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPSAGTSNYHHGNNPSAPQQPQQESDDAE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgtgtt
ccggtttctatttatttggtgaatggtattaagctgcaaggccagattgagtcttttgac
cagtttgtcatcctgttgaaaaacacggtgagccagatggtttataagcacgctatctct
accgttgttccgtcacgcccggtttcgcaccatagcaacaatccgagcgccggcaccagt
aactatcaccatggtaacaacccgtctgcgccgcaacagccgcagcaggaaagcgatgac
gctgaataa

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