Serratia plymuthica S13: M621_06700
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Entry
M621_06700 CDS
T02716
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M621_06700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sry03019
]
M621_06700
Enzymes [BR:
sry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M621_06700
Messenger RNA biogenesis [BR:
sry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M621_06700
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
UvrD-helicase
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP43530
UniProt:
S4YGP4
LinkDB
All DBs
Position
1411367..1412731
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AA seq
454 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQGGGRGNGGGQRSGNGGGQRSGNGGGHSG
QRENRGGGSARPQGDGKPRSGAPARRPRSRKPGE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaactctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcagcgccaggctatccctgtggtgttggaaggtcgtgac
ctgatggccagcgcacagaccggtaccggtaaaaccgctggctttaccctgccgctattg
cagctgctgagtaagcatgatcatccgatcaaaggccgtcgcccggtacgtgcgctgatc
ctgacgccaacccgtgaactggcggcgcagatcggcgaaaacgtcgaagcttacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtcgacattctggtggcaacaccgggtcgcctgctggatctggaa
caccagaacgcggttgatctgtccaaaattgaaattctggtgctggacgaagctgaccgc
atgctggatatgggctttatccatgatatccgccgcgtgctggccaagctgcctgccaag
cgtcagaacctgctgttctcggccactttctccgacgacatcaaagcgttggcgaacaag
ctgctgcacaacccggcatcggtggaagtggcgcgccgcaacaccgcgtccgagcagatc
gaacaaagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgattggaagcaagtcttggtgttcaaccgcaccaagcacggcgccaaccac
ctggccgagcagctgaacaaagacggcatcactgctgcagcgatccacggcaataaaagc
cagggcgcgcgtacccgtgcattggccgattttaaagacggcaaaattcgtgtgctggtg
gcaaccgacatcgcggcgcgcggtctggacatcgaccaactgccgcacgtggtgaactac
gagctgcctaacgtgccggaagattacgtgcaccgcatcggccgtaccggccgtgcagag
cgtaccggtgaggctatctcgttggtctgcgtggatgaacacaaactgctgcgcgacatc
gagcgcctgctgaagcgtgaaatcccgcgtattgccctgccaggctacgagccggaccca
agcatcaaggcggagccgatcatcaacggccgtcagggtggcgggcgcggcaacggcggc
ggtcaacgttccggcaacggtggtggtcaacgcagcggtaacggcggcggccatagcggc
caacgtgaaaaccgtggcggcggcagtgcccgccctcagggtgacggcaaaccgcgttca
ggcgcgccggcacgccgtccgcgcagccgcaaaccgggcgaataa
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