Serratia plymuthica S13: M621_09545
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Entry
M621_09545 CDS
T02716
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M621_09545 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sry03019
]
M621_09545 (rne)
03009 Ribosome biogenesis [BR:
sry03009
]
M621_09545 (rne)
Enzymes [BR:
sry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M621_09545 (rne)
Messenger RNA biogenesis [BR:
sry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M621_09545 (rne)
Ribosome biogenesis [BR:
sry03009
]
Prokaryotic type
rRNA processing factors
M621_09545 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AGP44017
UniProt:
S4YF32
LinkDB
All DBs
Position
complement(1994001..1997390)
Genome browser
AA seq
1129 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAEEPVAAQSAAAAAVAKPSAPTAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKA
EGNGENRRQDRRGQRRQGSGRKERGERGERGERSDRPERGERKERGEGRDNRERDNREPR
ENREPRDNRSEGRETREVRDEQRRNNRRNAPQVAAPVAEAPQSEEAAKAQREEQQQRRDQ
RAERQRRRQEEKRQAQQEVAALESVDTSTNVISDEDLEERQQQNMQRRQRRPLSQKVRVL
SAEEELHRAAEELLAPKAPVAKTQDVKPALEEDSVKLLPETLETPAEDDVQGDNRNGENG
MPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAGAFASPEMASGKVWVSYPVTQTAQ
VIEEAEVQTDATEIAADNVMAQQAVDVAAPVIAEAAAQTLAPVETAEVVIAEEAQPEVET
VAPVITAQLEETAAVPQAETPVVEEATVVKEATVVEETTVVEEATNVEATPVVEAAAVAE
ETAVVVEPVAAPAPIIVEAAPVQEAAAPVVVVEKPPVVQQPAPVQGTLYKHIATAPMTKA
PAPAYEPEEQKGSDWQRPSFNFEGKGSAGGHAAVNQATAPATKPQPVNE
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggacattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcactcgtattgaaccaagtcttgaagcagcgttcgttgattac
ggcgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagt
aactactcttctcatggtcgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
atcgttcaggttgacaaagaagaacgtggtaacaaaggcgcagccttgaccaccttcatc
agtctggccggcagttatctggtgctgatgccgaacaacccgcgtgccggtggcatttcc
cgccgcatcgagggtgacgaccgtaccgaactgaaagaagcgctttcctccctgcaattg
ccggatggcatgggtctgattgttcgtaccgcgggcgttggcaaatctgccgatgcgctg
cagtgggacctgtctttccgtctgaagcattgggaagccatcaagaaagccgccgaaggc
cgccctgctccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgcattccgtgac
tatctgcgcccggacatcggcgaaatcctgatcgataaccctaaagttctcgatttggca
aaagagcacatcgctgctctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaatccctctgttcagccattaccaaatcgagtctcagatcgaatccgccttccag
cgtgaagttcgcttgccttccggcggctcgatcgtcatcgacactaccgaagccttgacc
gccatcgacatcaactccgcgcgagcaacccgcggtggcgatatcgaagaaactgcgttc
aacaccaacctggaagcggcggacgaaatcgctcgccaactgcgcttgcgtgaccttggc
ggcctgatcgttatcgacttcatcgatatgaccccagtgcgccaccagcgcgaagtagaa
aaccgcctgcgtgacgcagtgcgtcaggaccgtgcgcgtatccagatcggccgcatttcc
cgctttggcctgcttgagatgtcgcgtcagcgcctcagcccgtcactgggtgaatccagt
catcacgtctgccctcgctgtaacggcaccggcaccatccgtgataacgaatcgctggca
ctttccattctgcgcctgatcgaagaagaagcgctgaaggaaaataccaaagaagttcac
gctatcgtgccggttcaggtcgcttcttacctgctgaacgaaaaacgtgagtcggtgagc
gcaatcgaaaaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaa
accccgcactactccgtgctgcgtgtgcgcaaaggcgaagaaacaccaaccctgagctac
ctgctgccgaaattgcacgaagaagagatggcccagccactggaagatgcgccgatggag
cgcaaacgtccggaacaaccggctctggcttcgttctctctggcggctgacgccccaccg
cctgccgaagaacctgtggcggcacagtccgctgctgccgctgccgtggcaaaaccaagc
gccccaaccgctgcaaaaccaggtctgttgggccgcctgttcggtggcttgaaagcgctg
ttcgccagtgaagaacaaccggttgttgaagccaaacctgccgttgaagcacctaaggcc
gaaggcaacggtgaaaaccgccgccaggatcgccgtggtcaacgccgtcagggttctggc
cgtaaagaacgtggtgaacgcggagaacgtggtgagcgtagcgatcgtcctgaacgtggc
gaacgcaaggaacgcggcgaaggccgtgacaatcgcgagcgcgataaccgtgaaccacgt
gaaaatcgtgagccgcgcgacaatcgcagtgaaggccgtgaaacgcgtgaagtgcgcgat
gaacaacgccgtaacaaccgccgcaatgcaccgcaggttgccgcaccggttgccgaggca
ccacagtctgaagaagccgccaaggcacagcgtgaagagcagcaacaacgccgtgaccag
cgtgccgaacgccagcgccgtcgtcaggaagagaagcgccaggctcagcaggaagtggct
gcactggaaagtgtagacaccagcaccaacgttatcagcgatgaagatctggaagaacgc
cagcagcaaaacatgcagcgtcgccagcgtcgtcctctgtcgcagaaagttcgcgtattg
tccgcggaagaagaactgcatcgcgcagcggaagagctgctggcccctaaagcgccagtg
gcgaaaacccaggacgtgaaaccggctctggaagaagacagcgttaaattgctgccagaa
acccttgagacaccggctgaagatgacgttcagggcgacaaccgcaacggtgaaaatggc
atgccacgccgttcacgccgctcgccacgccatctgcgcgtgagcggtcagcgccgtcgc
cgttaccgtgatgagcgttaccctgcccagtcgccaatgccgttggctggggctttcgcc
tctccggaaatggcttctggcaaggtatgggtaagttaccctgtaacacaaacagcacaa
gtgattgaagaagctgaagttcagactgatgctaccgaaatcgctgccgacaacgtgatg
gcacaacaagctgtcgacgtagccgctccggttatcgctgaagctgccgcacaaaccctc
gcaccggtagaaaccgctgaggttgtcattgcagaagaagcccagccggaagttgaaact
gttgcgccggtcattacggctcaattggaggaaacggctgcggtaccgcaggctgagacg
ccagtagttgaagaagctaccgtggttaaagaagctaccgtggttgaagagactaccgtg
gttgaagaagctacgaacgtcgaagcaaccccggtggttgaagccgcggctgttgctgaa
gaaactgccgttgttgttgagcctgtcgcagcgccagcgccgatcatcgttgaggccgca
cctgttcaggaagctgctgctccggtcgttgttgttgaaaaaccgccggttgttcagcag
ccagcgcctgtgcaggggacactctataaacatatcgccacagcgccaatgaccaaggcc
ccagcaccggcttacgagccggaagagcagaaaggcagcgattggcaacgcccttccttc
aatttcgaaggtaaaggctcggcggggggtcatgctgcggtgaatcaagccacagcgccg
gcaaccaaaccgcagccggttaacgaataa
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