Serratia plymuthica S13: M621_13590
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Entry
M621_13590 CDS
T02716
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sry
Serratia plymuthica S13
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sry03016
]
M621_13590
Enzymes [BR:
sry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M621_13590
Transfer RNA biogenesis [BR:
sry03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M621_13590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AGP44700
UniProt:
S4YJU0
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All DBs
Position
2851779..2853713
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTHFITEGEDHLAPWWVTLARHNLEKEAPEMVAI
SEPDAALPREDLTALNFVTIDSASTEDMDDALFVQDNGDGSLQLTIAIADPTAYVEQGSP
LDDIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLACRVTIGTDGALADDIRF
FAAEIESKAKLVYDEVSDWLEGITGWQPPSDEIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGEVLDIITEQRRSANRIVEECMIASNVCAAIVLRDRLGFGIYNVHTGFD
PALVEQAVTVLQANGVEADAEKLLTLDGFCELRRHLDSQPTQFLDSRIRRSQTYAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIAEQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLQDKAGTDERFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHSVRDE
MVCSQDTGTVQVKGEVVYRQSDTLQVNIAEVRMETRSVIAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaggtcgacggt
caaaagagctatttcatcccaccgccgtacatgaagaaagtcatgcatggggatcgcgtg
atcgccaccctgcacaccgagaaagaacgcgaaatcgccgagccggaaaccctggtcgag
ccattcctgtcgcgctttgtcggccgcgtgcagaagcgtgatgaccgcctgtccatcgtg
cccgatcatccgttgctgaaagacgcgattcagtgtcgcccggtgcgtgaactgacccat
aacttccaggccggtgactgggcggtagcggaaatgcgccgccacccgttgaaaggcgat
cgcggcttcaacgccgatctgacccacttcatcaccgaaggcgaagatcatctggcccct
tggtgggtcacgctggctcgccataatctggaaaaagaagcgccggagatggtggccatc
agcgagccggacgccgcgctgccgcgtgaagatctgaccgcgctgaattttgtcaccatc
gacagcgccagcaccgaggatatggacgatgcgttgttcgttcaggacaacggcgacggc
tcgctgcaactgaccatcgccattgccgatcctaccgcttacgtagagcaaggcagcccg
ttggatgatatcgcccgcaagcgcgccttcactaactacctgccgggcttcaacattccg
atgttgccgcgcgatctgtcagataacctgtgctcgctgcgcccgaacgaacgccgtccg
gtactggcttgccgcgtcaccataggtaccgatggcgcgttggctgacgatattcgtttc
ttcgccgccgagatcgagtcgaaagccaaactggtttatgacgaagtctccgactggctg
gaaggcattaccggctggcagccgccaagcgacgagattgcacagcaaatcaccctgttg
aaacgcgtctgcgatgcccgcaacgcctggcgccatcagcatgcgctggtgttcaaggat
cgccctgattaccgttttgttctgggcgaaaaaggcgaagtgctggatatcatcaccgaa
caacgccgcagtgccaaccgtatcgttgaagagtgcatgattgcctccaacgtgtgcgcc
gccatcgttctgcgcgatcgcctgggcttcgggatttacaacgtgcataccggtttcgat
ccggcgctggtggagcaggcggtgaccgtgctgcaagccaacggtgtggaagccgatgcc
gagaaactgctgacgctggacgggttctgcgaactgcgccgtcatctggactcgcaacct
acccagttcctcgacagccgtatccgccgttcccagacttatgccgagatcagcaccacg
ccaggcccgcatttcggcctagggctggaagcctatgccacctggacctcgccgatccgt
aaatacggcgatatggtcaatcaccgtctgctgaaagccatcatcgccgaacagcctgcc
gaaaaacctcaggacgacgtgacggtccaattggcggaacgccgtcgtcttaaccgcatg
gcggagcgtgacgtcggtgactggctgtatgcgcgttacctgcaagacaaagccggcacc
gatgaacgcttcaatgcggaaatcatcgacgtgacccgaggcggtctgcgcgtgcgcctg
ctggacaatggtgcggtcgcctttatccctgcaccgtttattcactcggtgcgtgatgaa
atggtctgcagccaggataccggcacggtgcaagtgaaaggcgaagtcgtctatcgccaa
agcgatactctgcaggtcaacatcgccgaagtgcgtatggaaacccgtagcgtgatcgcc
aaaccggcggcgtaa
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