Serratia plymuthica S13: M621_20095
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Entry
M621_20095 CDS
T02716
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03030
DNA replication
sry03430
Mismatch repair
sry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M621_20095 (dnaE)
03430 Mismatch repair
M621_20095 (dnaE)
03440 Homologous recombination
M621_20095 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sry03032
]
M621_20095 (dnaE)
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_20095 (dnaE)
Enzymes [BR:
sry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M621_20095 (dnaE)
DNA replication proteins [BR:
sry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M621_20095 (dnaE)
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M621_20095 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGP45750
UniProt:
S4YMR6
LinkDB
All DBs
Position
complement(4229209..4232697)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYM
RNADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIMSGAFDRLGPHRAAL
MSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgttcatagtgactactccatgattgatgga
ttagccaagatcgggccgttggtgaaaagagccgccgcgttagccatgcctgctttggca
attaccgatttcaccaacctgtgcgggttggtgaagttctatggcagtgcgcatggcgcc
gggatcaaaccgatcatcggcgcggattttcatgtgcaaagcgaagtgctgggcgatgag
ctggcgcagctcaccgtactggccgccaataatgacggttatcaaaacctgacgctgctg
atttcccgcgcttaccagcgtggttacggcgccgcaggcccgattattgaccgcgactgg
ctgatagaacaccgcgaggggttaatcctgctttctggtgcccgtcagggggacgtcggc
aaatttttgctgcgcggtaaccagcaacaggtagatcagtgcctggacttctatcagcaa
tatttcccggacagctattaccttgaactgatccgcacaggccggccggacgaagaaaac
tacctgcatgcagccgtagcgctggcgaccgaacgtgggttgccggtggtggccaccaac
gacgtgcgttttctggtagaggatgactttgacgcccatgagatccgcgtcgccatccat
gacggtttcacgcttgacgatcccaaacgcccgcgcaactacagcacgcagcaatatatg
cgcaacgcagacgagatgtgcgagctgtttgccgacatccccgaagcgctgctcaacagc
gtcgaaatcgccaagcgctgcaatgtcaccatccgtctcggcgaatacttcctgccacag
ttcccgaccggtgatatgaccaccgaggatttcctggtactcaaatcgaaggaagggctg
gaagagcgcctggaattcctgttcccggatccggaagtgcgcgcacagcgccgccctgaa
tacgacgaacgtctggatattgagctgaaagtgatcaaccagatgggcttcccgggctac
ttcctgatcgtaatggaattcatccagtggtcgaaagataacgatgtgccggtagggccg
ggacgcggttccggtgccggttcactggtggcctatgcgctgaaaatcaccgatcttgat
ccgctggaatttgatttgctgttcgaacgtttccttaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttttgcatggaaaaacgcgatctggtgattgagcacgtggcggag
atgtatggccgtgaggcggtatctcagatcattaccttcggcaccatggcggccaaagcg
gttattcgcgacgtgggtcgcgtgctgggtcacccctatggtttcgtcgatcgtatctcc
aagctggtgccgcccgatccgggcatgacgctggaaaaggcatttgccgccgaaccgcaa
ctgccggaaatttacgaggctgacgaagaagtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaagcacgccggcggcgtggttattgcgcctacc
aagatcaccgacttcgcgccgctgtactgcgatgccgaagggaatcacccggtcacccag
tttgacaagaatgatgtggaatacgccgggctggtgaagttcgacttccttggcttgcgc
accctgaccatcatcgactgggcgctggggatgatcaatgcccggcgagcgaaaagcggg
ctggaacccattgatatcgcggctattccgctcgaagacaaaaaaagcttcgatatgctg
cagcgctcggaaaccactgcggtattccagctcgaatcacgcggcatgaaggatctgatc
aagcgcctgaaacctgactgtttcgaagatatgatcgcactggtggcgctgttccgtccg
ggcccgttgcagtcaggcatggtggataacttcatcgaccgcaaacacggccgcgaagag
atttcttacccggatatccagtggcagcatgagtcgcttaagccggtgctggaaccgacc
tatggcatcatcctgtaccaggaacaggtcatgcagattgcccaggtgctggccggctat
acgctgggcggcgcggacatgctgcgtcgtgcgatgggtaaaaagaacccggttgagatg
gccaagcagcgcggcggtttcgaagatggggcaaaatcgcgcggcatcgacggtgaactg
tcggtaaaaatcttcgatctggtagagaaattcgccggttacggctttaacaaatcgcac
tccgccgcctatgcgctggtgtcctaccagacgctgtggttaaaggcccactacccggcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgacaaggtcgtggggttg
gtggatgaatgctggcgcatgggcctgaaaatcctgccgccggacattaacagcggccag
taccatttccacgtcaatgatgaaggcgagatcgtttacggtatcggcgcgatcaaaggc
gtcggagaagggccgattgaagccattctcgaagcgcgaaacagcggggagcagggctac
tttaaagacctgttcgatctctgcgcgcgctccgatgtcaaaaaactcaaccgccgaatt
ctggaaaaactgatcatgtccggggcattcgaccgccttggaccgcatcgcgccgcgctg
atgagttcactgggcgacgcgttgaaagcagccgatcagcatgcgaaagccgaagctatc
ggccaggtggacatgtttggcgtcctggcggaagcgccggaacaagtggagcaatcctac
gccaatgtgccccgctggcaggagcaggtggtgctggatggcgaacgggagacgttgggg
ctatacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgacgaccgccgttggg
ctggtgatcgcctcgcgggttatggtcaccaagcgcggtaatcgcatcgggatttgtacg
ctggatgaccgttcgggccgtctggaagtgatgttattcaccgatgcgttagaaaaatac
cagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgacggcccgcgaactaatggacatcagtgaagcccgtgaa
aaatacgctcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatagatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa
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