Serratia plymuthica S13: M621_20665
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Entry
M621_20665 CDS
T02716
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sry
Serratia plymuthica S13
Pathway
sry03410
Base excision repair
sry03430
Mismatch repair
sry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M621_20665
03430 Mismatch repair
M621_20665
03440 Homologous recombination
M621_20665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_20665
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M621_20665
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M621_20665
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M621_20665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
AGP45845
UniProt:
S4YN24
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All DBs
Position
complement(4357078..4358811)
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AA seq
577 aa
AA seq
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MSLKTQLRRRAATDDSHLPAGLHPLLRRLYALRGVKAEQELERSVKGMLPWQQLDGIDTA
VGILQQALAANRRIMVVGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPE
VVEQAAARGAELILTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCEFPSKSLAGVGVAFYLMLALRARLRESGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEEAKFDEFRLRFGELVGEWLDPAMLEGVIWSDGELAMQELSLE
TAELLREGGPWGQAFPEPTFDGRFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcaaaacacaactacgccgccgtgcggcgacggacgacagccatctgcctgcc
ggcctgcatccgctactgcgccgtttatacgcgctacgcggcgttaaggctgaacaggaa
ctggagcgcagcgtcaaaggcatgctgccctggcagcaattggacggcatcgacaccgcc
gttggcattctgcaacaggcgctggccgcgaatcgccgcatcatggtggtgggggacttc
gacgccgatggcgccaccagtaccgcgttgacggtgttggccttgcgcagcatgggcggc
agtgcggttgactatctggtgccgaaccgattcgaggacggctacggtctgagtccggaa
gtggtcgagcaggcggcggcgcgcggtgcagagttgatcctgaccgtggataacggcatc
tcttcccatgcgggcgttgacgtggcgcacgccaagggtatgcaggtactggtcaccgac
caccacctgccgggggaaaccttgccggcggcggaagcgatcgtcaacccgaacctgcgc
ggctgtgagttcccctccaaatccttggccggcgtcggtgtggctttctatctgatgctg
gcgttgcgtgcccggctgcgtgaaagcggttggtttgaacaacgtgcgttggcgatgccg
aacctggcagaactgttggatctggtcgctctcggcacggttgccgacgtagtgccgctt
gacgccaataaccgcattttggtgtatcagggcctgaatcgcattcgcgccggcaagtgt
cggccgggcatccgggcgctgctggaagtggccaaccgtgacgcgcgccaactggcggcc
aacgatcttggttttgcgctggggccgcggctcaatgccgccgggcggctggacgacatg
tcgattggcgtggcgttgttgctgagcgatgacattgcgcaggcgcgcatgctggccaac
gatctcgatgcgcttaacctgacaaggcgtgagattgagcagggcatgcaggtcgaggcc
ttgcagttgtgcgacgaactggagcgcagcagcaccgctttgccgtatgggctggcgatg
tatcatccggaatggcatcagggcgtggtgggcattctggcctcgcgcatcaaagaacgt
tttcaccgcccggtgattgcgtttgcgccggcgggcgagggcattctgaaaggttccggc
cgttcgatagccggcctgcacatgcgcgacgcgctggagcggctggatacgctgaatccg
ggtttgatgatgaagttcggcggccatgcgatggcggccgggttatcgttggaagaggcc
aaattcgacgagtttcgtctgcgctttggcgaactggtgggggaatggctcgatccggcg
atgctggaaggggttatctggtccgacggcgaactggcgatgcaggagctttcgctggaa
acggcggagctgttgcgcgaggggggcccttgggggcaggcgttcccggaaccgacgttc
gacggtaggttccgtatcctgcaacagcggttggtgggcgagaaacacctgaagctgatg
gtggagccgctcggtggcggcccgttgctcgacggcatcgccttcaacgtggacaccacc
ctgtggcccgacagcagcgtgcgtgaagtggagctggcctacaagctcgacgtcaatgag
ttccgtggtaaccgcaacgtgcagttattgatccagcacctctggccgcgttga
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