Serratia plymuthica S13: M621_23000
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Entry
M621_23000 CDS
T02716
Name
(GenBank) regulatory protein
KO
K18765
RNase E specificity factor CsrD
Organism
sry
Serratia plymuthica S13
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sry03019
]
M621_23000
Messenger RNA biogenesis [BR:
sry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M621_23000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
AGP46205
UniProt:
S4YP12
LinkDB
All DBs
Position
complement(4897246..4899177)
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AA seq
643 aa
AA seq
DB search
MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQDRLERRFDSLVTSLDQSMLHGSPDE
QQQWLPLVMRPLGIVAVSVDSDRTNLFTYKLPALKLPWDSLNGYRQVSRSLLQHPGSSLH
ITYIDPFVSDVRSLQSTGAVTLSIVAMVVILLFSLRWLREQAEGEDLLERRARRILNGER
ENVMQGDVREWPANVSGALDRLLADLAEAREARSRVDTLIRAFAAQDAKTGLNNRLFFDN
QLATQLEEQGSHGIVMMVRLPDFDTLRETHGNTAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRTLKEADGIAAQLVNAIDSLPSTALIDREAFLHIGIVAYRSGQTPEQV
IDYAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLVRGGPRLYQKPAVTVE
GDVHHREIMSRIYDGTQELLPSEYMPLVQQLGLAESYDRQHISRILPLLALWPEETLAFT
LCVDSLLQRSFQRWLRDTLLQCEKNHRRRILIELAEADVCQHIDRLRPVLRLLSGLGCRL
AVSQAGLTVVSASYIKSLPVEIVKLHPGLVRGIDKRDENQLFVQSLTGACEGTRAKVFAA
SVRTSNEWQTLKERGILGGQGDFFAPPEPIDVGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactgtcagcgctgatcaccctgcttgttgctctggcgatgttt
ttgatgctgatggggtgctcatacagtttcttctacgtgactcaggatcgtctggagcgc
cgcttcgattcgctggtgacgtcgctcgatcagtcaatgctgcatggttctcccgatgaa
cagcaacaatggttgccgctggtgatgcgcccgcttggtatcgtggccgtcagcgtcgat
agcgaccgcaccaatctcttcacttataaactgccggctttgaagttgccctgggattcg
ctgaacggctaccggcaggtttcccggtcgctgctgcagcacccaggcagttcgctccac
attacctatatcgatccgttcgtcagcgatgtgcgctcgctgcaatccaccggggctgtg
accttgtcgattgtcgcgatggtggtgattttgttgttcagcctgcgctggctgcgtgag
caggccgagggggaggatctgctggagcgtcgtgcgcgccgcatccttaacggtgaacga
gaaaacgtgatgcagggcgatgtgcgcgaatggccggccaacgtcagcggtgcgcttgat
cgcctgctggcggatttggcggaagcgcgtgaagcgcgcagccgggtcgatacgctgatc
cgcgcttttgccgcacaggacgcaaaaaccgggctgaacaaccgattgtttttcgataac
caactggccactcaattggaggagcaaggctcgcacggcattgtcatgatggtgcggtta
cccgatttcgatacgctgcgggaaacccacggcaacacggcggtgcaggaactgatgtac
tcgctggtcaatttgctgtcgacctttgtgatgcgctatccggcggcgctgttggcgcgc
tatttccacagtgatttcaccgtgctgttgccgcaccgcacgttgaaagaggcggacggc
atcgccgcgcagttggtgaatgccattgactcattgccttcaacggcgcttatcgatcgc
gaagcgttcttgcatatcggcatagtggcgtatcgcagtgggcaaaccccggaacaggtg
attgattacgcggagcaggcaacgcgtcacgccacgttacaaggggaaaacggctggtac
gtttacgacagccaggtgcccgaaaaagggcgcggcagcgttaaatggcgcaccctgttg
gaacaggtattggtacggggcggcccacgcctgtatcagaaaccggcggtaacggtggaa
ggggacgttcatcaccgcgagatcatgagccggatttatgatggaacccaagagttgcta
ccctcggaatatatgccgctggtgcagcagttggggctggccgaaagttacgatcgtcag
catatcagccgcattcttcccttgctggcgttgtggccggaagagacgctggcatttacg
ctgtgcgtcgattcattattgcagcgcagtttccagcgctggctgcgcgataccctgcta
cagtgcgaaaaaaaccaccgtcgacgaattctgattgaacttgcagaggcagacgtgtgt
caacatatcgaccgtttgcgaccggtgctgagattgctttcaggattggggtgtcgtctt
gccgtttctcaggcggggttaaccgtggtcagtgcctcttatatcaagtccttaccggtg
gagatcgtcaaactccacccgggtttagtgcgggggattgataaacgtgatgaaaatcag
ctgttcgttcagagcctgaccggcgcctgcgaaggcacccgtgccaaggtgtttgccgcc
agcgtgcggacgagcaacgaatggcagacgctgaaagagcgcgggatccttggcgggcaa
ggtgacttttttgcgccgccggagccgatagacgtggggcgtaaaaaatattcgcgtcgt
tatcgcgtttaa
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