Serratia plymuthica S13: M621_25125
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Entry
M621_25125 CDS
T02716
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
sry
Serratia plymuthica S13
Pathway
sry00541
Biosynthesis of various nucleotide sugars
sry01100
Metabolic pathways
sry01250
Biosynthesis of nucleotide sugars
Module
sry_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
M621_25125 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sry01005
]
M621_25125 (rfaD)
Enzymes [BR:
sry01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
M621_25125 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
sry01005
]
Core region
M621_25125 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
ThiF
KR
adh_short
Motif
Other DBs
NCBI-ProteinID:
AGP46594
UniProt:
S4YPE2
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All DBs
Position
5350528..5351457
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AA seq
309 aa
AA seq
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MIIVTGGAGMIGSNIIKALNDTGYRDILVVDNLKDGTKFANLVDLDIADYIDKEDFIANI
VAGDDLGEIDAVFHEGACSSTTEWDGKYMMDNNYQYSKDLLHYCLDREIPFLYASSAATY
GGREEFIEERQFEEPLNVYGYSKFLFDQYVREILPEADSQICGFRYFNVYGPREGHKGSM
ASVAFHLNSQINRGENPKLFDGSQDFKRDFIYVGDVAAVNLWFWKSGVSGIFNCGTGRAE
TFQAVADAVVDFHQKGAVENIPFPEKLKGRYQAFTQADLTKLRAAGYDAPFKTVAEGVKE
YMAWLNRTA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgttactggtggcgccggcatgatcggcagcaatatcattaaggcgctgaat
gacacagggtatcgcgatatcctggtggtagataacctgaaagacggcaccaaattcgcc
aacctggtcgatctggatatcgccgactatatcgataaagaagattttatcgccaacatc
gtggccggtgacgatctgggtgaaatcgacgcggtattccatgaaggtgcctgttcatcc
accaccgagtgggatggcaagtacatgatggacaacaactatcagtactccaaagacctg
ctgcattattgcctggatcgcgaaatcccgttcctgtacgcctcatcggcagccacctac
ggcggccgtgaagaatttatcgaagagcgccagtttgaagagccgctgaacgtgtacggt
tactccaaattcctgttcgatcagtacgtacgtgaaattctgcctgaggcggattcacag
atctgcggcttccgttacttcaacgtttatggcccgcgcgaaggccacaaaggcagcatg
gccagcgttgcattccacctgaacagccagatcaaccgcggcgagaacccgaaactgttc
gacggcagccaggacttcaagcgtgactttatctacgtcggcgacgtcgccgcggtaaac
ctgtggttctggaaaagcggcgtgtccggcattttcaactgcggcaccggccgtgcggaa
accttccaggcggtggccgacgcggtggtcgatttccaccagaaaggcgcggtggaaaac
atcccgttcccggaaaaactcaaaggtcgctaccaggcgtttacccaggccgacctgacc
aaattgcgcgctgccggctatgacgcgccgttcaaaacggtcgccgaaggcgtgaaagag
tacatggcctggttgaaccgcaccgcttaa
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