Serratia plymuthica S13: M621_25390
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Entry
M621_25390 CDS
T02716
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03030
DNA replication
sry03410
Base excision repair
sry03420
Nucleotide excision repair
sry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M621_25390
03410 Base excision repair
M621_25390
03420 Nucleotide excision repair
M621_25390
03440 Homologous recombination
M621_25390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sry03032
]
M621_25390
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_25390
Enzymes [BR:
sry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M621_25390
DNA replication proteins [BR:
sry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M621_25390
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
M621_25390
NER (nucleotide excision repair)
GGR (global genome repair) factors
M621_25390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
DUF2529
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AGP46645
UniProt:
S4YQY2
LinkDB
All DBs
Position
complement(5405946..5408747)
Genome browser
AA seq
933 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT
LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATLNFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELDLSCAELEVSPLDVDALQQLFKQYEFKRWLADVEAGIWLEGK
KGTGAKAISASKPAGVVADTPKVAAEATLSQEGYVTILDEKTFADWLKKLKNAEVFAFDT
ETDGLDTLTANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVLATLKPLLEDEKALK
VGQNLKFDMGLLARYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEI
AGKGKKQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPV
LSHIERTGVLIDQSILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKL
PVLKKTPGGAPSTNEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVH
TSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAH
LSQDEGLLKAFAEGKDIHRATAAEVFGVPLDKVTGEQRRSAKAINFGLIYGMSAFGLARQ
LGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYLPDVSSSNGMRR
KAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQDEPLVRMIMQVHDELVFEIHESVIEA
SSQRIRELMENSMTLAVPLKVDVGVGANWDEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccattaatcctggttgacggttcctcttacctctaccgt
gcttatcacgctttccctccgctgaccaattccgcgggcgaaccgaccggagcaatgtac
ggcgtactgaatatgctgcgcagcctgctgttgcagtaccagccaagccatgttgcggtg
gtgtttgatgccaaaggaaaaaccttccgcgatgagctgttcgcagagtacaaatcacat
cggccaccgatgccggacgatctgcgcgctcaaatcgagccactgcacaaaatggtcaag
gccatgggccttccgcttttggtcacgcctggcgtagaagcggatgacgttatcggcacg
ctggctctggaagccgaaaaggccggccatgcggtgttgatcagcacgggcgataaagat
atggcgcagttggtcacaccgaacgtgacgctgatcaacaccatgaataacaccattctt
ggtccgcaagaagtgtgcgataagtacggcattccgccggcgctgattatcgacttcctg
gcgctgatgggcgactcctcggataacatcccaggagtgccaggcgtgggtgagaaaacc
gcgcaggcgctgttacaggggcttggtgggctggatgcactctatgccaacctggacaac
atcgccacgctcaacttccgtggcgccaagaccatggcagccaagctggaacagaacaaa
gaggtggcgtatctctcctataagctggcgacgattaaaaccgatgtcgagctggatctt
tcctgcgcagaactcgaagtctctccgctggacgttgacgcgctgcaacagttgttcaaa
cagtacgaattcaaacgttggctggcggatgttgaagccggcatctggctggaaggcaaa
aaaggcaccggcgcgaaagcgatcagtgcgtcgaaacctgccggcgtagtggcagacacc
ccaaaagtggctgcggaagcgacgctgtcgcaagaaggttacgtcaccatattggatgag
aagactttcgctgattggctcaaaaagctgaaaaacgccgaagtatttgccttcgatacc
gaaaccgacggtctggataccctgaccgccaacctgatcggcctgtcctttgccgttgcg
ccgggcgaagccgcttatttgccggtggcgcatgactatctcgatgcgccggcgcagttg
gatcgcgcttatgtgctggcaacgctgaaaccgttgctggaagacgagaaagcgctgaag
gtcggtcagaacctgaagtttgatatgggtttgttggcgcgttacgacatcaccctgcgc
ggcattgccttcgacaccatgctggaatcctatgtgttggacagcgtgggcggtcgccac
gacatggacagtttgtccgatcgctatctcggccataaaaccgttacctttgaagagatc
gccggtaagggcaaaaagcagctcaccttcaaccagattgcgctggagcaggcggcgcct
tacgcggccgaagatgccgatgtcacgctgcagttgcatttggcaatgtggccgcagttg
aaagaaagcgccgagctgttgacggtgttcaatgagattgaaatgccgctggtgccggtt
ctgtcgcatatcgagcgcaccggggtgctgattgaccaaagtattttggccacccactcg
atcgagttgaccaagcggctggccgagctggaaattcaggcgcacgaactggcggaagag
ccgttcaatctggcgtcgaccaaacaactgcaggcgatcctgtacgaaaagcaaaagctg
ccggtcctgaagaaaacccctggtggcgcaccctcgaccaacgaagaagtgttggccgag
ctggcgctggattatccattgccgaaggtgattctggaataccgtgggttggcgaagctg
aaaaccacctacaccgataagctgccgttgatgattaacccgtttagcgggcgggtgcac
acctcctaccatcaggcggtgacggccaccggacgcctctcctccagcgatcctaacctg
cagaatattccggtgcgtaacgacgaaggacgccgcatccggcaggcatttattgcccct
gaaggctaccgcatcgtcgcggcggactattcgcagattgaactgcgcatcatggcccac
ctgtcgcaggatgaggggctgctgaaggcatttgccgagggtaaagacatccaccgcgct
acggcagccgaagtgtttggcgtgccgttggacaaggtgaccggcgagcagcgccgcagc
gccaaagcgatcaactttggcctgatttacggcatgagcgcattcggcctggcgcgtcag
ttggggattccgcgcggcgaagcgcagcgctatatggatctttatttcgagcgttatccg
ggcgtgctggagtatatggagcgcacacgccaacaggctgccgaacagggttatgtcagt
acattggatggtcgtcgcctgtatctgccggacgtcagttccagcaatggcatgcgccgc
aaggccgccgaacgtgcggcgatcaacgccccgatgcaggggacggcagccgatatcatc
aagcgcgcgatgattgaggtggacgcctggttgcaaggtcaggatgagccattggtgcgc
atgatcatgcaggtgcacgatgaactggtgttcgagatacatgagtcagtgattgaagcg
tccagccagcgcatccgcgagttgatggaaaacagcatgacgttggcggtaccgctgaaa
gtggacgtcggcgtgggtgccaactgggatgaagcccattga
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