Serratia rubidaea: AXX16_0124
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Entry
AXX16_0124 CDS
T04417
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srz
Serratia rubidaea
Pathway
srz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXX16_0124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_0124
03009 Ribosome biogenesis [BR:
srz03009
]
AXX16_0124
Enzymes [BR:
srz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXX16_0124
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXX16_0124
Ribosome biogenesis [BR:
srz03009
]
Prokaryotic type
rRNA helicases
AXX16_0124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AML55886
UniProt:
A0A126VDG6
LinkDB
All DBs
Position
complement(134545..136401)
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AA seq
618 aa
AA seq
DB search
MTVELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQL
YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRT
RILNKPMNMQLLGDAQPHERRERRDGGNRRPFNGERREGGPRRSFGERREGGNAAGNGER
RGGNASRERAPRRRFGDA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gctctgaacgacctgggctatgttaagccatcacctattcaggctgagtgtattcctcac
ctgttgaacggccgcgatgtgctgggtatggcacaaaccggcagcggcaagactgcggcg
ttctcgctgccgctgctgcacaatatcgacgcttccctgaaggcgccacaaatcctggtg
ctggcaccaacccgcgaactggcggtgcaggttgccgaagcgatgaccgatttctccaaa
cacatgaacggcgtgaacgttgtggccctgtatggcggccagcgttacgacgtacagctg
cgcgccctgcgtcaaggcccgcaaatcgtggtgggtacgccaggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctccaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgttgaaaccatcatggcggaaatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgattcgccgcatcacccgc
cgctttatgaaagagccgcaggaagtgcgcattcagtccagcatcaccacccgtccggac
atcagccagagctactggacggcgtacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcggaagactttgatgcggcgattatcttcgtgcgcaccaaaaacgccacgctg
gaagtggcggaagcgctggagcgtaacggctacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaagacggccgcctggacattctg
atcgccaccgacgtggcagcgcgtggtctggacgttgagcgtatcagcctggtggttaac
tacgacatcccgatggacgcagaatcttacgttcaccgtatcggtcgtaccggccgcgcc
ggccgtgccggtcgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgagcgcaccatgaagctgaccattccggaagtagaactgccgaatgcagaactgctg
ggcaaacgccgtctggaaaaattcgccgctaaagttcagcagcagctggaaagcagcgat
ctggatatgtaccgtgcactgctggctaaactgcagccggaagaagagctggacatggaa
acgctggccgccgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctgccaccg
gatccggtcttcaagccgcgtaaaccacgtgagttcaacgatcgtgacgaccgccgcggc
gaccgtcgtgacggcgaccgtccgcgtcgtgaacgtcgtgacgttggtgaaatgcagctg
taccgcattgaagtgggccgtgatgacggcgttgaagtgcgtcatatcgtcggcgctatc
gccaacgaaggcgacatcagcagccgttacatcggtaacatcaagctgtttggctcccac
tccaccatcgagctgccaaaaggcatgccgggcgagatcctgaatcacttcactcgcacc
cgcattctgaacaagccgatgaacatgcagctgctgggcgatgcacagccgcacgagcgc
cgcgaacgtcgcgacggcggcaaccgtcgtccgttcaacggtgagcgccgcgaaggcggc
ccacgtcgttctttcggtgagcgtcgtgaaggcggcaacgcagccggcaacggcgagcgt
cgtggcggcaacgccagccgcgagcgcgcaccacgtcgtcgtttcggcgatgcataa
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