Serratia rubidaea: AXX16_0126
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Entry
AXX16_0126 CDS
T04417
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srz
Serratia rubidaea
Pathway
srz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXX16_0126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_0126
03016 Transfer RNA biogenesis [BR:
srz03016
]
AXX16_0126
Enzymes [BR:
srz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AXX16_0126
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AXX16_0126
Transfer RNA biogenesis [BR:
srz03016
]
Prokaryotic type
tRNA degradation factors
AXX16_0126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
aRib
OB_RRP5_4th
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AML55888
LinkDB
All DBs
Position
complement(137602..139722)
Genome browser
AA seq
706 aa
AA seq
DB search
MLTPTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDHFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYVNDQYVLNPTVDELKESRLDLVVA
GTAGAVLMVESEAEVLSEDQMLGAVVFGHEQQQVVIDNINSLVAEVGKPKWDWQPTPVNE
ALQARVAELAQSRLGDAYQITEKQDRYAQVDAIKEDVTAALLEQDETLDAADIQDALSDL
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISQFAPRIHTMKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATASEEAAPAAPEAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgacaccgactattcgcaaattccagtatggccagcataccgtcaccatcgagacc
ggtatgatggcgcgtcaggcgacggccgccgtcatggtaagcatggacgacaccgccgta
ttcgttaccgtcgtgggccagaaaaaagccaaaccaggccagagcttcttcccgctgacc
gttaactatcaggagcgtacctacgccgccggtcgtatcccgggcagcttcttccgtcgt
gaaggccgtccgagcgaaggcgaaaccctgacttcccgtctgattgaccgtccaatccgc
ccactgttcccggaccacttcctgaacgaagtgcaggtgatcgcgaccgtggtttccgtt
aacccgcaggttaacccggatatcgtggcgatgatcggcgcctccgcagcgctgagcctg
tccggcattccgttcaacggcccaatcggcgcggcgcgcgtgggttatgtcaatgaccag
tacgtgctgaacccgaccgttgacgagctgaaagagagccgtctggacctggtggttgcc
ggtaccgccggcgcagtgctgatggttgaatctgaagccgaagtgctgagcgaagatcag
atgctgggcgccgtggtgttcggccacgagcagcagcaggtggttatcgacaacatcaac
tcactggttgccgaagtgggcaaacctaagtgggactggcagccgactccggttaacgaa
gcgctgcaggcgcgcgtagccgagctggcgcagagccgtctgggcgatgcttaccagatc
actgagaagcaggatcgttacgcacaggttgacgccatcaaagaagacgtcaccgccgcg
ctgctggagcaggacgagacgctggacgcagcagatatccaggacgcgctgagcgatctg
gagaaaaacgtggtgcgtagccgcgtactgcgtggcgagccgcgtatcgacggccgtgaa
aaagacatgatccgtggtctggacgtgcgcaccggcgtactgccgcgtacccatggctcc
gcgctgttcacccgtggcgaaacgcaggcgctggttaccgctaccctgggcaccgcacgc
gacgcgcagaacctggacgagctgatgggcgaaaagaccgacagcttcctgttccactac
aacttccctccgtactccgtgggtgaaaccggcatggtcggttcaccgaagcgtcgtgaa
attggtcacggtcgcctggcgaaacgcggcgtattggctatgatgcctaaaccggaagat
ttcccgtacaccgttcgcgtggtgtccgagatcactgaatccaacggttcttcttccatg
gcttccgtctgtggcgcctctctggcgctgatggacgcaggcgtgccgatcaaggcagcg
gttgcgggcatcgccatgggtctggtaaaagaagacgacaactttgtggtactgtcagac
attctgggtgacgaagaccacctgggcgacatggacttcaaagtggccggtagccgtgac
ggtatcaccgcgctgcagatggatattaaaattgaaggcatcacccgcgaaatcatgcag
gtggctctgaaccaggccaagggtgcgcgtctgcacattctgggcgttatggaacaggcg
atcagcacgccgcgcggtgatatctctcagttcgcaccgcgtatccataccatgaagatc
aatccggacaagattaaggatgtgatcggtaaaggcggctccgtgatccgtgcgctgacc
gaagagactggcactaccattgaaatcgaagatgatggtacagtgaaaatcgcagcgacc
gacggtgagaaagcgaaatacgccattcgtcgtattgaagagatcaccgctgagatcgaa
gttggccgtatctaccagggtaaagtaacccgtatcgttgatttcggcgccttcgtggcc
atcggcggcggtaaagaaggtctggtgcacatttctcagatcgctgacaagcgcgttgag
aaagtgaccgactatctgcagatgggccaggaagtgccggttaaggtgctggaagttgat
cgccagggccgcgtgcgcctgagcatcaaggaagccactgcctctgaagaggcggctcct
gctgcgcctgaagcagaataa
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