Serratia rubidaea: AXX16_0262
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Entry
AXX16_0262 CDS
T04417
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srz
Serratia rubidaea
Pathway
srz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXX16_0262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srz03021
]
AXX16_0262
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_0262
Enzymes [BR:
srz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXX16_0262
Transcription machinery [BR:
srz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXX16_0262
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXX16_0262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AML56016
LinkDB
All DBs
Position
complement(273069..277292)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGPKEAERIYRAG
LASLHARVKVRITEEVKDAEGEWTTQTSLVDTTIGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEEVLKPGTADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNSGSIKL
SNAKFVVNSSDKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDNAEVTGGETVANW
DPHTMPVVSEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VNANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVQIGSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEADGKIGATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLNGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggtttgttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggcgtcatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttctccgactgcgcacatctggttcctgaaatcgctg
ccgtcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctacgtggtggttgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagcgatccaggccctgttgaaaaacatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgaccagcgatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtttgaag
cgcctgctggatctggccgcgccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggccgttccgttatcaccgttggtccatac
ctgcgtctgcaccagtgtggcctgccgaagaaaatggcgctggaacttttcaaaccgttc
atctacggcaagctggagctgcgtggcctggccaccaccatcaaagccgccaagaagatg
gttgagcgcgaagaagccgtcgtctgggatatcctggatgaggtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcctttgaaccggta
ctgatcgaaggtaaagccatccagctgcacccgctggtttgtgcggcgtataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtctccagcgaacggcgagccaatcatc
gttccgtctcaggacgtggtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaacggtcctaaagaagccgagcgtatttaccgcgccggc
ctggcctctctgcacgcgcgcgttaaagtgcgtatcactgaagaagtgaaagatgcggaa
ggcgagtggacgacgcagaccagcctggtggacaccaccatcggccgcgccatcctgtgg
atgatcgtgccgaaaggcctgccgtacgctatcgttaaccagccgctgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagctcgttcaggtgcttccgtaggt
atcgacgacatggttatcccggcgaagaaagccgagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccaatcgggtctggttaccgccggcgaacgctacaac
aaggttatcgatatctgggctgcggccaacgaacgcgttgctaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaggtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcaaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatctggtagtgaccgaagacgactgtggcacgcacgacggcatc
ctgatgactccggtcatcgaaggcggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggtcgtgtgaccgcggaagaagtcctgaagccgggtacggcggacattctggtgccgcgt
aacaccctgctgaacgagaaatggtgtgatctgttagaagagaactccgttgacagcgtg
aaggttcgctccgtcgttagctgtgaaaccgacttcggcgtgtgtgccaactgctatggt
cgtgacctggcgcgtggccacatcatcaacaagggtgaagccatcggcgttatcgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacagcggtagcatcaagctg
agcaacgccaagtttgttgtcaacagcagcgataagctggttatcacctcgcgtaacacc
gagctgaagctgatcgacgaattcggccgtaccaaagagagctacaaggtgccttacggt
gccgtgatggcgaaaggcgacaacgcggaagtgaccggcggtgaaaccgttgcgaactgg
gatccgcacaccatgccggttgtcagtgaagtgagcggtttcattcgcttcgccgatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggcctgtcatcactggta
gttctggattctgcagaacgtaccgcgggcggtaaagacctgcgtccggcgctgaaaatc
gttaacgccaacggcgacgacgttctgatcccgggcaccgatatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagacggcgtgcagatcggttccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggatctgttcgaagcccgtcgtccgaaagagccggcaatcctggctgagatcagc
ggcattatctcgttcggtaaagagaccaaaggcaaacgtcgtctggttatcactccgctg
gacggcagcgatgcctacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggcgaacgcgtcgaacgtggtgatgtggtttccgatggtccagagtccccgcacgacatt
ctgcgactgcgtggcgtgcatgcggttacccgctacattaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttagcgctggtggctctgagttcctggaaggcgaacaggct
gaagtgtcccgcgtcaagattgccaaccgccagctggaagctgacggcaagatcggggca
accttcgcacgcgacctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tctgccgcatcgttccaggaaacgacgcgcgttctcaccgaagcggcggttgccggcaag
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcaccaggaccgcatgcgtcgtcgtgcacagggcgaagcaccggtt
gttccgcaggtgagcgcggaagaagcgaccgccaacctggctgaattgctgaatgcaggt
ctgaacggcagcgacgacgagtaa
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integrated database retrieval system
