Serratia rubidaea: AXX16_0263
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Entry
AXX16_0263 CDS
T04417
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srz
Serratia rubidaea
Pathway
srz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXX16_0263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srz03021
]
AXX16_0263
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_0263
Enzymes [BR:
srz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXX16_0263
Transcription machinery [BR:
srz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXX16_0263
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXX16_0263
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AML56017
LinkDB
All DBs
Position
complement(277409..281437)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALNYTSEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SQEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGIEADKLSQLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKADFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gtgttggatgtaccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgcattccgttctgtgttcccaatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagatccgtggtgtgacgttctccgcaccgctgcgcgtcaaactg
cgcctggttatctatgagcgagaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgaaattccgctcatgaccgaaaacggtacctttgttattaacggt
actgagagggttatcgtatcccagctgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcgtcgggtaaagtgctgtataacgcacgcatcatcccttaccgt
ggttcctggctggacttcgagtttgacccgaaagacaacctgttcgtgcgtatcgaccgc
cgtcgtaaactgccggcctcgatcattctgcgcgcgctgaactacacctcagagcagatc
cttgacctgttcttcgagaaagttgttttcgaaatccgcgacaacaagctgcagatggag
ctggttccagagcgtctgcgtggtgagaccgcgtcgttcgatattgaagccaacggcaaa
atctacgttgagaaaggccgtcgcatcacggctcgccatatccgtcagcttgaaaaagac
gatatccagagcatcgaagtgccggttgagtacatcgcgggcaaagtggtcgccaaagac
tacatcgataccaataccggtgaactgatctgcgccgccaacatggagctgtcgctggat
ctgctggcgaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcgcctacatctccgagacgctgcgtgtcgacccgaccaatgaccgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccaccgacgcgtgaagcg
gcggaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctgtccgcggtc
ggccgtatgaagttcaaccgctctctgctgcgcgatgaaatcgaaggttcaggcatcctg
agccaggaagacatcatcgacgtgatgaagaagctcatcgacatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgcatccgctccgtgggcgaaatggct
gagaaccagttccgcgtaggtctggtgcgcgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggacaccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctcaagccagctgtcccagtttatggaccagaacaacccg
ctgtccgagattacgcacaagcgtcgtatctccgcactgggcccgggcggtctgacccgt
gagcgcgccggcttcgaagtgcgtgacgtacacccgacccactacggtcgtgtatgtcca
atcgaaaccccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggttacc
gatgaaatcaactacctgtctgccattgaagaaggcaacttcgttatcgcccaggctaac
tccaacctggatgatgacggccgcttcgtggaagacctggtcacctgccgcagcaaaggc
gaatccagcctgttcagccgcgatcaggttgactatatggacgtatccacccagcaggtt
gtttccgttggtgcctctctgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggtgccaaccctgcgtgctgacaagccgctggtc
ggtaccggtatggaacgcgcagtagcggttgactccggcgttaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggcatcgatatttataacctgaccaagtacacccgttccaac
cagaacacctgcatcaaccagatgccgtgtgtgaacctgggcgaacctatcgagcgcggc
gacgtgctggcagacggtccgtctaccgatctgggtgagctggcgctgggtcagaacatg
cgtgtggcgttcatgccttggaacggctacaacttcgaagactccatcttggtgtccgaa
cgcgttgtccaggaagatcgcttcaccaccatccacatccaggaactggcttgcgtgtcg
cgcgacaccaaactggggcctgaagagatcaccgccgatatcccgaacgtgggtgaagca
gcgctctctaaactggatgagtcaggtatcgtctacatcggtgcggaagtgaccggcggc
gacattctggtaggtaaggtgacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtccgatgtgaaagactcttctctgcgtgtg
ccgaacggcgtttccggtaccgttatcgacgtgcaggtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgctcgaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggtctgtttgcgcgtatccacgcggtgctggtt
gccggcggcattgaagctgacaagctgagccaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggaacagctggccgagcagtacgacgaa
ctgaaagccgacttcgagaagaaactggaagccaagcgtcgtaagatcacccaaggcgac
gatctggcacctggcgtgctgaaaatcgtcaaggtgtacctggcggttaaacgtcagatc
cagccgggtgataaaatggcaggtcgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggcg
gcgaaaggcattggtgagaagatcaaccagatgctcaagcagcagcaggaagtggccaaa
ctgcgtgaattcatccagaaagcgtacgatctgggtgacgacgtttgccagaaagtcgac
ctgaacaccttcagcgatgaagaagtgctgcgcctggcggagaacctgaaaaaaggtatg
ccgatcgcaacgccggtgttcgatggtgcgaaagagactgaaatcaagaaactgctggaa
atgggcggtatcccgacctccggtcagatcacgctgttcgatggccgtaccggcgagcaa
tttgagcgtcaggtaaccgtaggctatatgtacatgctgaagctgaaccacctggtcgac
gataaaatgcacgctcgttcaaccggttcttacagtctggttacgcagcagcctctgggt
ggtaaagcgcagttcggtggccaacgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcttataccctgcaggaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgctcgctgggtatcaacatcgaactggaa
gacgagtaa
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integrated database retrieval system
