Serratia rubidaea: AXX16_0399
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Entry
AXX16_0399 CDS
T04417
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
srz
Serratia rubidaea
Pathway
srz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXX16_0399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_0399
Enzymes [BR:
srz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXX16_0399
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXX16_0399
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AML56140
LinkDB
All DBs
Position
419161..420435
Genome browser
AA seq
424 aa
AA seq
DB search
MTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLT
STFHYLLTRPAKQDRQTNQPRALIMAPTRELAVQIHADAEMLSQSTGMKLGLAYGGDGYD
KQLKVLEKGVDILIGTTGRLIDYAKQNYIDLSAIQVVVLDEADRMYDLGFIKDIRWLFRR
MPTADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR
LLQTLIEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKG
NLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA
LNLPAIEAYTGHSIPVSKYNSDALLDGLPAPKRLSRPRGGNNSRRNSSQRRSGGAPRNNR
KRSG
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgactgaacagaagttttccgacttcgccctgcacccgttagtccttgaagcccttgag
aaaaaagggtttcacaactgcacgcctatccaggcgctggcattaccgctcgcgctctcc
gggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacgttggcatttctgacg
tctacttttcactatttacttacccgcccggcgaaacaggatcgccagaccaaccaaccg
cgcgccttgatcatggcgcctacgcgcgagctggcggtgcagatccacgccgatgcggaa
atgctgtcgcagtccaccgggatgaagctgggcctggcctacggcggcgacggttatgac
aaacagctgaaagtgctggaaaagggcgtagacattctgatcggcaccaccggccgtctg
atcgactacgcaaaacaaaactatatcgacctgagcgccattcaggtggtggtgctggat
gaagccgatcgcatgtacgatctgggctttatcaaagatatccgctggctgttccgccgc
atgccgacggccgatcagcgcctcaatatgctgttctccgctaccctttcctaccgcgta
cgcgagctggcgttcgaacagatgaacaatgccgagtatgtggaagtcgaaccggaacag
aaaaccggccaccgcatcaaagaagagctgttctacccgtctaacgaagagaagatgcgc
ctgctgcagacgctgatcgaagaagagtggccggaccgcgccatcgtcttcgccaacacc
aagcaccgctgcgaggacatctggggccacctggccgccgacggccaccgcgtcggcctg
ctgaccggcgacgtcgcccagaaaaagcgcctgcgcattctggaagacttcaccaaaggc
aacctggacattctggtggccaccgacgtggcggcgcgcggtctgcacattcctgcggtg
acccacgtcttcaactacgatctgcctgacgactgcgaggactacgtccaccgcatcggc
cgtaccggccgcgccggcgccagcgggcactccatcagcctggcctgtgaagagtacgcg
cttaacctgccggcgatcgaagcctataccggccacagcatcccggtcagcaagtacaac
agcgatgcgctgctggacggtttgccggcgccgaaacgcctgtcgcgcccgcgcggcggc
aataactcgcgccgtaattcatcgcaacgccgcagcggcggcgcgccgcgcaacaaccgt
aaacgttcaggctga
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