Serratia rubidaea: AXX16_0520
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Entry
AXX16_0520 CDS
T04417
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
srz
Serratia rubidaea
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srz03032
]
AXX16_0520
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_0520
Enzymes [BR:
srz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AXX16_0520
DNA replication proteins [BR:
srz03032
]
Prokaryotic type
DNA Topoisomerases
AXX16_0520
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AXX16_0520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
GyrB_hook
Toprim
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AML56259
LinkDB
All DBs
Position
complement(564812..567226)
Genome browser
AA seq
804 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQ
VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRRDGQVHEQTYSHGEPQAPLTVVGETEQTGTTVRFWPSHQTFTNVV
EFEYDILAKRLRELSFLNSGVSIRLKDKRSDKEDHFHYEGGIKAFVEYLNKNKTPIHPNV
FYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEY
LLENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRRNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDDAMDQYQIAIALDGATLHTNPDAPALSGEALEKLVSEHNSVQKLIARMERR
YPRALLNNLIYQPTLAEEELGDRAKVQSWIESLASLLNDKEQHGSSYSFEIYENRERQMF
EPALRIRTHGVDTDYLLDFDFIHGGEYRKICQLGEKLRGLIEEGAFIERGERRQPVDSFE
KALEWLVKESRRGLAVQRYKGLGEMNAEQLWETTMDPENRRMLRVSVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtgcgt
aagcgcccgggcatgtatatcggcgataccgatgacggcaccggtctgcaccacatggta
ttcgaggttgtggacaacgctatcgacgaagcactcgctggccactgtagtgatattcag
gtcaccatccatgccgacaactccgtgtcggtgcaggatgacggccgtggcattccgacc
gggatccacccggaggaaggcgtttccgccgcgcaggtcatcatgaccgtactgcacgcc
ggcggtaagttcgacgataactcttacaaggtttccggcggcctgcacggcgtgggcgtc
tcggtggttaacgcactgtccgagaagctggaactggtgatccgccgcgacggccaggtg
cacgagcaaacctacagccacggcgagccgcaggcgccgctgaccgtggtcggcgagacc
gaacagaccggcaccacggtgcgtttctggccgagccatcagaccttcaccaacgtggtg
gagttcgaatacgacatcctggcgaaacgcctgcgcgaactgtcgttcctcaactccggc
gtgtccatccgtctgaaagacaagcgcagcgacaaagaggaccacttccactacgaaggc
ggcatcaaggcgtttgtcgaatacctgaacaagaacaaaaccccgatccacccgaacgtg
ttttatttctccaccgtgaaggacgacatcggagtggaagtggcgctgcagtggaacgac
ggcttccaggaaaacatctactgcttcaccaacaacattccgcagcgtgacggcggcacc
cacctggcgggcttccgcgcggcgatgacccgtacgctgaacgcctatatggacaaagaa
ggctacagcaaaaaggcgaaggtcagcgccaccggcgacgatgcgcgtgaaggcctgatc
gccgtggtgtcggtgaaagtgccggatccgaagttctcctcgcagaccaaagacaagctg
gtctcctccgaggtgaaatcggcggtggaacagcagatgaacgaactgctgagcgaatac
ctgctggaaaacccgggcgatgcgaaaatcgttgtgggtaaaatcatcgatgcggcgcgc
gcgcgtgaagcggcgcgtaaagcgcgtgagatgacgcgccgtaaaggggcgctggatctg
gccggcctgccgggcaagctggcggactgccaggaacgcgacccggcgctgtccgaactg
tacctggtggaaggggactccgcgggcggctctgccaagcaggggcgcaaccgcagaaac
caggcgattctgccgctgaagggtaaaatcctcaacgtggagaaagcgcgcttcgacaag
atgctctcttcgcaggaagttgccaccctgatcaccgcgctgggttgcggcatcggccgc
gatgagtacaacccggacaagctgcgttaccacagcatcatcatcatgaccgatgctgac
gtcgacggctcgcacatccgtacgctgctgttgaccttcttctaccgtcagatgccggaa
atcattgagcgcggtcacgtgttcattgcccagccgccgctgtacaaggtgaagaaaggc
aagcaggaacagtacattaaagatgatgacgcgatggaccagtaccagatcgccatcgcg
ctggacggcgccaccctgcacaccaacccagatgcgccggcgctgtcgggtgaagcgctg
gaaaaactggtgtctgaacacaacagcgtgcagaagctgattgcccgcatggagcgccgc
tacccgcgcgcgctgctgaacaacctgatctatcagccgacgctggcggaagaggagctc
ggcgaccgcgcgaaagtgcagagctggatcgaatcgctggccagcctgctgaacgacaaa
gagcagcacggcagcagctacagctttgaaatctatgaaaaccgtgaacgtcagatgttc
gaaccggcgctgcgtatccgcacccacggcgtggataccgactacctgctggactttgac
tttattcacggcggcgaataccgcaagatttgccagctgggcgagaagctgcgcggcctg
attgaagaaggcgcgtttatcgaacgcggcgaacgtcgtcagccggtcgacagcttcgaa
aaagcgctggagtggctggtgaaagagtcgcgtcgcggcctggcggtacagcgttataaa
ggtctgggcgagatgaacgccgagcagctgtgggaaaccaccatggatccggaaaaccgc
cgcatgctgcgcgtcagcgtcaaggatgcgattgcggcggaccagctgttcactaccctg
atgggcgatgcggttgaacctcgtcgcgcctttatcgaagaaaacgccctgaaagcggcg
aacatcgatatctaa
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