Serratia rubidaea: AXX16_0627
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Entry
AXX16_0627 CDS
T04417
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srz
Serratia rubidaea
Pathway
srz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AXX16_0627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_0627
Enzymes [BR:
srz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AXX16_0627
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AXX16_0627
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AXX16_0627
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
AML56362
LinkDB
All DBs
Position
684326..685135
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPYLVGHSIQYAVVRNARLRWPVSEQILALSDRPVRSVQRRAKYLL
IELDAGWIIVHLGMSGSLRMLAEESEAGKHDHVDLVMSNGMILRYTDPRRFGAWLWCEDP
ATSNVLAHLGPEPLSEAFDGRYLFDKSRNKRTLIKPWLMDNKLVVGVGNIYASESLFTAG
ILPDRPAGSLSLPEAELLAATIKAVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRA
GEPCRVCGTPIESAKHGQRSTFFCRRCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaattaccagaagttgaaaccagtcgccgcggtattgaaccgtatcttgtcgga
cacagcatccagtacgccgtggtgcgcaatgcgcgtctgcgctggccggtctccgaacag
atcctggcgttgagcgaccggccggtgcgcagcgtccagcgccgcgccaaatacctgctg
attgaactggatgccggctggattatcgtccacctcggcatgtcgggcagcctgcgtatg
ctggcggaagagagcgaggccggcaagcatgaccacgtcgacctggtgatgagcaacggc
atgattctgcgctataccgatccacgccgttttggcgcctggctttggtgtgaagacccg
gcaaccagcaacgtgctggcccatctggggccggagccgctgagcgaggcgtttgacggc
cggtatctgttcgataagtcgcgcaataagcgtacgctgattaaaccctggctgatggat
aacaagctggtggtgggcgtggggaatatctatgccagcgagtcgctgtttaccgccggg
atccttccggaccgccctgcgggatcgttgagcctgccggaggccgagctgctggcggca
acgattaaggccgtgctgcagcgctcgatcgaacagggcggcaccacgctgcgtgatttt
ctgcagtcggacgggaaaccggggtattttgcgcaggaactgcaggtctacggacgcgcc
ggcgaaccttgtcgggtctgcggcacgccgattgagagcgcgaagcacgggcagcgcagc
accttcttctgccgccgctgccagcattaa
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