Serratia rubidaea: AXX16_1381
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Entry
AXX16_1381 CDS
T04417
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
srz
Serratia rubidaea
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_1381
Enzymes [BR:
srz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AXX16_1381
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AXX16_1381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
AAA_22
HA2_N
ResIII
DUF2934
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AML57101
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All DBs
Position
1485488..1487926
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AA seq
812 aa
AA seq
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MSLLPVSQVLDELLAALRSAPQVLLHAPTGAGKSTWLPLQILRQANLPGRIIMLEPRRLA
AKNVAYRLAQQLGEEPGQTVGYRMRAESKSGPATRLEVVTEGILTRMLQQDAELQGVSLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNARLSQLLPAAPVVVSQGRS
FPVARHYQPLASHQRLEDGVASAVKRLLAEQPGSLLLFLPGVAEILRVMERLQGEVAGDV
DLCPLYGALPLAQQQRAIQPAAAGRRKVVLATNIAETSLTIEGIRLVVDSGLERTARFDA
RNGLTRLITQRISQASMVQRAGRAGRLEEGVCWHLCAKEQAERAAEYAEPEILHSDLSGF
WLELLQWGCVDAGQLSWLDLPPPAALAAAQRLLQTLGAADEQGKLTAAGRRMATLGCEPR
LAAMLCAGAALGEDGLATAALLAALLEEPPRNGQLDIDYWLSRPQPHWQRRARQLAQRLK
GRDGRVDAELAPRLLAHAFADRIAQRRGQDGRYLLANGMGAAMNQDEALSRAPWLIAPAL
LQGANSPDARILLALPLDVERLAAQLPEIAQQRTAVEWDEEKGTLRAWQRLQIGRLTLRA
RPLAKPADDELQQALVDWVRAQGLAVLNWEGAAGQLRARLQCAREWLPEVDWPAVDDEAL
LAELERWLLPALGGVRDLRGLRQVNLAEALSNLLDWQQKQRLDNALPTHYTVPTGSRLPI
RYEAGKPPLLPVRLQEMFGEQRSPMLAEGRIAVVLELLSPAHRPLQITADLAAFWQGAYR
EVQKEMKGRYPKHVWPDDPANALPTRRTKKYQ
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttattgcccgtcagccaggtgctggatgagttgcttgccgcgctgcgcagcgcg
ccgcaggtgttgctgcacgcgccgaccggcgccggtaagtccacctggctgccgctgcag
atcctgcggcaggccaacctgccggggcgcatcatcatgctggagccgcggcgtctggcg
gcgaaaaacgtcgcctatcgcctggcgcagcagctgggggaagagccggggcaaaccgtg
ggctaccgcatgcgcgccgaaagcaaaagcgggccggcgacgcggctggaggtggtcacc
gaaggcattctgacccgcatgctgcagcaggatgcggagctgcagggcgtctcgctggtg
atcctggatgaattccatgagcgcagcctgcaggccgatctggcgttggcgctgctgctg
gacgtacagcaggggctgcgtgacgatctgaagctgctgattatgtcggcgacgctggat
aacgcccggctgtcgcaactgctgccggccgcgccggtggtggtgtcgcaggggcgcagt
tttccggtggcgcgtcactatcagccgctggccagccatcagcggctggaggacggcgtc
gcctcggcggtcaagcgactgctggcggagcagccgggatcgctgctgctgtttttaccg
ggcgtggcggagattttgcgggtgatggagcggctgcagggcgaggtcgccggcgatgtc
gacctgtgtccgctgtacggcgcactgccgctggcgcagcagcagcgggcgattcagccg
gccgccgccggacggcgcaaagtggtgctggcgaccaatattgctgaaaccagcctgacg
attgagggcatccggctggtggtggacagcggcctggagcgcacggcgcgttttgacgcg
cgcaacggcctgacgcgtctgattacccagcgcatcagccaggcgtcgatggtgcagcgc
gccggacgcgccgggcgcctggaagagggcgtctgctggcatctgtgcgctaaagagcag
gccgagcgcgccgccgagtacgccgagccggaaatactgcacagcgatctcagcggcttc
tggctggagctgctgcagtggggctgcgttgacgccggccagctgagctggctggatctg
ccgccgcccgcggcgctggcggcggctcagcggctgttgcagacgctgggggccgccgat
gaacagggcaaactgacggcggcgggacgccggatggcgacgcttggctgcgaaccgcgg
ctggcggcgatgctgtgcgccggcgcggcgttgggggaggacggcctggcgacggccgcc
ttgctggcagcgctgctggaagagccgccgcgtaacgggcaattggatattgattactgg
ctcagccggccgcagccgcactggcaacggcgcgcgcgccagctggcgcagcgcctgaag
gggcgcgacggccgcgtggacgccgaactggcgccgcggttgctggcgcacgcctttgcc
gatcgtatcgcccagcggcgcgggcaggacggccgctatctgctggcgaacggcatgggg
gcggcgatgaatcaggatgaggcgctgtcgcgcgcgccgtggctgatcgcgccggcgctg
ctgcagggggcgaacagcccggacgcgcgtattctgctggcgctgccgctggacgttgaa
cggctggcggcgcagttgccggagattgcgcagcagcgcaccgcggtggagtgggatgaa
gaaaaaggcacgctgcgcgcctggcagcgtctgcagatcggccgtctgacgctgcgcgcc
cggccgctggcgaaaccggcggacgacgagctgcagcaggcgttggtggactgggtgcgc
gctcagggcctggcggtgctgaactgggagggcgccgccggccagctgcgcgcgcgtctg
cagtgcgcgcgggagtggctgccggaggtcgactggccggcggtggacgatgaggcgctg
ctggcggagctggagcggtggctgctgccggcgctcggcggcgtgcgcgatctgcgcggt
ctgcggcaggttaatctcgccgaggcgttgagcaacctgctggactggcagcagaaacag
cggctggataatgcgctgcccactcattacactgtgccgaccggcagccgcctgccgatc
cgctatgaggccggcaagccgccgctgctgccggtgcgtctgcaggagatgttcggcgag
cagcgcagcccgatgctggcggagggtcgcatcgcggtggtgcttgagttactctctccg
gcgcaccggccgctgcagatcaccgccgacctggcggcgttctggcagggcgcctaccgg
gaagtacagaaagagatgaaggggcgctacccgaagcacgtctggcccgacgacccggcc
aacgcgctgccgacgcgccgcaccaagaagtatcagtag
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