Serratia rubidaea: AXX16_1519
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Entry
AXX16_1519 CDS
T04417
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
srz
Serratia rubidaea
Pathway
srz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AXX16_1519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_1519
Enzymes [BR:
srz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AXX16_1519
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AXX16_1519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Peptidase_M16_C
Motif
Other DBs
NCBI-ProteinID:
AML57238
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All DBs
Position
1638042..1641413
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AA seq
1123 aa
AA seq
DB search
MFTVYHSNQLDVLKTLTSVLIAREPLADPFQQEVVLVQSPGMAQWLQMQLAEQFGIAANI
EFPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLPDMLTQPEFAPLQHYLTDDGD
KRKIHQLAGRVADLFDQYLVYRPQWLESWQRGELVAELPEAQQWQAPLWARLVQYTQELG
QPEWHRANLYRRFIATLEQAQQCPPGLPKRVFICGISALPPVYLEALQALGRHIDIHLMF
TNPCRYYWGDIQDYAFLARLQSRKRRRHHQAQAQGLFRDPEQAAQLFDAEGEQQLNNPLL
ASWGKLGRDHLYLLAQMESLQEVDAFVDVPADNLLHGIQRDMLELEDCSVIGTTPDTFER
SDAKRPLDPDDRSLSLHACHSPQREVEVLHDRLLAMLADDPQLSARDIIVMVADIDSYTP
YIQAVFGNAPADRYLPFAISDRKARQAHPALQAFISLLDLPQSRFTSEQVLLLLEVPALA
ARFAIQEEGLRLLRHWVAESGVRWGLDDDNVRELALPATGQHTWRFGITRMLLGYAMDSN
VGDWQGVLPYDESSGLAAELAGQLAELLTQLAQWRQRLSETRTLAEWAPLCRQLLESFFA
ADGDTEAALALIEKQWHQVLEHGTNARYPDAVPLSLLRDELAARLDQERISQRFLAGQIN
FCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVKRGDRSRRDDDRYLFLEAI
LSAQEKLYISFIGRSIQDNSERYPSVLVTELLEYLQQSYCLPGDEALDVDASARRVSEHL
LRWHARMPFAAENFIPDSEAQSYAAEWLPAADGRGQAHPEFNQPLPAEPRVEIALDELLR
FYRHPIRAFFQQRLGVSFVLEETELPDEEPFTLDNLSRYQYNNQLLNALIDGDDAAKLYQ
RIRASGGLPYGAFGEIYWQKQQEEMEELAAQVREERRESGSLELDISVAGVHIGGWLHQV
QEDGLLRWRPAALSAVDGILLWLEHLLYCSAGGQGESRMLGRKNSVWRFAALPADAAQAQ
LAELVAGYQRGLCQPLMLLNKSGWAWLSQCYQPENQAIDWSEEAQAKARAKLLQAWQGDQ
RIPGEGEDPYVQRVLRQLDNEALAQILAETERYLLPVARHNLG
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtttacggtttatcattccaatcagctggacgtgctgaaaacgctgaccagcgtcctg
atcgccagagaaccgttggccgaccctttccagcaggaggtggtgctggtgcaaagtccg
gggatggcgcaatggctgcagatgcagctggccgagcagttcgggattgccgccaatatc
gagtttccgctgccggcgacctttatctgggaaatgttcacccgcgtgctgccgggcatc
ccgaaagaaagcgccttcagtaaggacgccatgacctggaagctgatgtggctgctgccc
gatatgctgacgcagcccgaatttgccccgctgcagcactatctgaccgatgacggcgat
aagcgcaagatccaccagcttgccggacgcgtggccgacctgtttgaccagtatctggtg
taccggccgcagtggctggaaagctggcagcgcggcgaattggtcgccgagctgcccgaa
gcgcagcagtggcaggcgccgctgtgggcgcggctggtgcagtatacccaggagctgggg
cagccggagtggcaccgcgccaacctgtatcgccgctttatcgccacgctggaacaggcg
cagcagtgcccgccggggctgccgaaacgggtattcatctgcggtatttcagcgctgccg
ccggtctatctggaggcgttgcaggcgctgggcagacatattgatattcacctgatgttc
accaacccgtgccgctactactggggcgatattcaggactacgcgtttctggcgcgcttg
caaagccgcaagcggcgtcgccaccatcaggcgcaggcgcagggactattccgcgatccc
gagcaggcggcgcagctgtttgatgccgagggggagcagcagctgaacaacccgctgctg
gcgtcatggggcaaactggggcgcgatcacctgtatctgctggcgcagatggaaagcctg
caggaggtcgacgcctttgtcgatgtgccggcagacaatctgctgcacggcatacagcgc
gatatgctggaactggaggattgctcggtgatcggcaccacgccggacacctttgaacgc
agcgacgccaaacgcccgcttgaccccgacgaccgctcgctgagcctgcacgcctgccac
agcccgcagcgcgaggttgaggtgctgcacgatcggctgctggcgatgctggcggacgat
ccgcagctgagtgcgcgcgatattatcgtgatggtcgccgatatcgacagctatacgccg
tatattcaggcggtgttcggcaatgcgccggccgatcgctacctgccgttcgccatttcc
gaccgcaaggcgcgtcaggcgcatcctgcgctgcaggcctttatctctctgcttgattta
ccgcagagccgctttacctctgaacaggtgctgctgctattggaggtgccggcgctggcc
gcgcgcttcgctattcaggaggaggggctgcgcctgctgcgccactgggtggcggagtcc
ggcgtgcgctgggggctggatgacgataacgtgcgcgagctggcgttgccggccaccggc
cagcacacctggcgttttggcatcacccgcatgctgctgggctatgccatggacagcaac
gtcggcgactggcaaggggtgctgccgtacgacgagtccagcggactagcggcggagctg
gccggccagttggcggaactactgacgcagcttgcccagtggcgtcagcgcctcagtgaa
acacgcaccctggcggaatgggcgccgctctgtcgccaactgctggagagcttttttgcc
gccgacggcgacacggaagccgcgctggcgctgatagaaaagcagtggcaccaggtgttg
gagcacggcaccaatgcccgctatcccgacgcggtgccgctgagcctgctgcgtgacgag
ctggcggcgcgtcttgatcaggagcggatcagccagcgctttctggccgggcagatcaac
ttctgcacgctgatgccgatgcgttctatcccgttcaaagtggtgtgcctgctcggcatg
aacgacggcgtttatccgcgtacgctgccgccgctggggttcgacctgatggcgcagcag
gtaaaacgcggcgatcgcagccgccgcgacgacgaccgctatctgttcctggaagccatt
ttatccgcgcaggaaaagctgtatatcagctttatcggccgttcgattcaggacaacagt
gaacgttacccgtcggtgctggtgacggagttgttggagtatctgcagcagagctactgc
ctgccgggggacgaagcgctggatgtggacgccagcgcgcgtcgggttagcgaacattta
cttcgctggcatgcccggatgccgttcgcggcggaaaatttcataccggacagcgaggcg
caaagctacgccgccgaatggctgccggccgccgacgggcgcggccaggcgcaccctgag
ttcaatcagccgctgccggccgaaccccgcgttgagatcgcgctggatgagctgctgcgc
ttctaccgtcacccaatccgcgcattcttccagcagcgcctgggcgtgagctttgtgctg
gaagagaccgaactgccggatgaagagccgtttacgctggataacctcagccgctatcag
tacaacaatcagctgttgaatgcgctgattgacggcgacgatgcggcgaagctgtatcag
cgcatcagggcctccggcggcttgccctacggcgccttcggcgagatttactggcagaag
cagcaggaagagatggaggagctggcggcgcaggtgcgtgaggagcgtcgggagagcggc
agcctggaactggatatcagcgtggcgggcgtgcatatcggcggctggctgcatcaggtg
caggaagatggcctgttgcgctggcggccggctgccctgtcggcggtagacggcattctg
ctgtggctggagcatctgctgtattgcagcgcgggcggccagggtgaaagccgcatgctg
gggcgcaagaattcggtctggcgctttgccgccctgccggcggacgcggcgcaggcgcaa
ctggcggagctggtggccggctatcagcgcggtctgtgccagccgctgatgctgctcaat
aagagcggctgggcctggttaagccagtgctatcagccggaaaatcaggcaattgactgg
agcgaagaggcgcaggccaaagcgcgcgctaaactgctgcaggcctggcagggcgaccag
cgcattcccggcgaaggggaggatccttatgttcagcgggtgctgcgccagctggataat
gaggccctggcgcaaattttagcggaaacagaacgttacctgctgccggtcgccagacat
aatctgggataa
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