Serratia rubidaea: AXX16_2624
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Entry
AXX16_2624 CDS
T04417
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
srz
Serratia rubidaea
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srz03016
]
AXX16_2624
Enzymes [BR:
srz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AXX16_2624
Transfer RNA biogenesis [BR:
srz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AXX16_2624
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AML58323
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All DBs
Position
2828892..2830013
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AA seq
373 aa
AA seq
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MNYTLITTDAGLQQVCEQARTHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
TQWQPFIDLLSDKAVVKYLHAGSEDLEVFLNAFQTLPTPLVDTQILAAFTGRPLSCGFAT
LVAAYMQVELDKSESRTDWLARPLTERQCQYAAADVFYLLPMAGQLVQEVEQAGWTEAAS
NECLLLCQRRSETLAPELAYREINNAWQLRPRQLGCLQKLAAWRLQQARQRDLAVNFVVR
EENLWAVARHMPTSMGELDALGLSGPEIRFHGKTLLALVAEANALDEAALPPPVANLVEH
PGYKKVFKEIKAAIAAVSEQSGLSSELLASRRQINQLLNWHWKLKNSDCQPELINGWRAG
LLAEPLLAILQSY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatacgttgatcactaccgatgccggattgcagcaggtctgcgaacaggccaga
acacatgctcagatcgcgcttgataccgaatttgtcagaacgcgcacctattacccgcag
cttggccttatccagttatacgatggtgaacaactctccctgattgaccccctgccgatt
acccagtggcagccgtttattgacctgctgagcgacaaagcggtggtgaaatacctgcat
gccggcagtgaagatcttgaagtgttcctgaatgcgttccaaaccttgccgacgccgctg
gtggatacccagatcctggcggcgtttaccggccggccgctgtcgtgcgggttcgccacg
ctggttgccgcgtatatgcaggttgagttggacaaaagcgagtcgcgcaccgactggctg
gccagaccgctgaccgaacgccagtgccagtatgccgcggccgatgtgttttatctgctg
ccgatggccgggcaattggtgcaggaagtggagcaggccggctggaccgaagcggcgagc
aacgaatgcctgctgctgtgccagcgtcgcagcgaaacgctggcgccggagctggcctac
cgcgaaatcaataacgcctggcaactgcgcccgcgtcagctgggctgtttgcaaaagctg
gccgcatggcggctgcagcaggcgcgtcagcgcgatctggcggttaatttcgtcgtgcgg
gaagagaacctgtgggcggtggcgcgtcatatgccgacctccatgggagagctggatgca
ttgggcctgagcggcccggagatccgttttcacgggaaaacgctgctggcactggttgcc
gaggccaacgcgctggatgaggctgcgctgccgcctccggtcgccaacctggttgagcat
ccgggttacaagaaggtgtttaaggaaatcaaagcggcgattgccgccgtcagtgagcaa
agcggcttaagcagcgagttgctggcgtcgcgtcgccaaattaaccagctgctgaactgg
cattggaaactgaaaaacagcgactgccagccggaattaatcaacggctggcgtgcggga
ttattagccgaaccattattggcaatcctacagagttattaa
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