Serratia rubidaea: AXX16_3323
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Entry
AXX16_3323 CDS
T04417
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srz
Serratia rubidaea
Pathway
srz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXX16_3323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_3323
03009 Ribosome biogenesis [BR:
srz03009
]
AXX16_3323
Enzymes [BR:
srz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AXX16_3323
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXX16_3323
Ribosome biogenesis [BR:
srz03009
]
Prokaryotic type
rRNA processing factors
AXX16_3323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AML59019
LinkDB
All DBs
Position
3578417..3581677
Genome browser
AA seq
1086 aa
AA seq
DB search
MDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPNSYSSHG
RPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD
DRTELKEALSSLQLPDGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAEGRPAPFL
IHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHIAALGRPDFSSKIKMYSGEIPLF
SHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNLEA
ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGRISRFGLLE
MSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEEALKENTKEVHAIVPVQ
VASYLLNEKRESVSAIEKRQAGVKAVIVPNDQMQTPHYSVLRVRKGEETSTLSYLLPKLH
EEEMVQPLEETPMERKRPEQPALASFSLGADAPPPAAESAPVKKPAASQPSAPAAAAAPG
LLSRFFSGLKSLFAGEEPQPAAEEKPAETAKSSSGENRRQDRRSQRRQGSGRKERGERGE
RSERNERGERKERSERKERGEGRERDNREGRDRDNRESRDEQRRNRRNAANNAPASADAP
VVDEAAKAQREEQQQQRREQRAERQRRRQEEKRQAQQEVQQLEKAAVEPVAAAEEDKEDR
HQQPAQRRQRRQLSQKVRILSAEEELQRAAEELLAPKAPAATAEESKAPAADDSIKLLPE
TVAVTGEEEAQENRNGENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTAAFAS
PEMASGKVWVGYPVTTAAQPVEETEVKSPSADIVEQQPAAETAASVAAPVIAAAQDEVQA
PAAAAAAASVEPEESTPAAALPQEEVKAPQPAAVEAPADVASDAEPVAEAAPSQPEEQPA
APVAVAPAADNAAAEEQAVTEQAVEEAAIAAPAEAVVTEPAPQPVSDETAATPAPAIVAQ
PAETRYKHIASAPMTKAPAPAYQPEAPKHSDWQRPAFNFDGKGSAGGHSAVSQATAPATK
PQPVND
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
ttggatatcgaaagcccgggtcatgagcagaaaaaagcgaacatttacaaaggcaaaatc
acccgtattgaaccaagtcttgaagcagcgtttgttgactacggcgcagaacgacatggt
ttccttcctcttaaagaaatcgcccgcgaatacttccctaacagctattcctcccatggc
cgccccaacatcaaagatgtgctgcgcgaaggccaggaagtgatcgtacaggttgataaa
gaagagcgcggcaacaaaggcgccgccctgaccacctttatcagcctggccggcagctat
ctggtgctgatgccgaacaacccgcgcgccggcggcatttcccgccgcatcgagggcgac
gaccgcaccgaactgaaagaagcgctctcctcgctgcaactgcctgacggtatgggcctg
atcgtccgtaccgccggcgtcggcaaatccgccgaagcgctgcagtgggacctgtcgttc
cgcctcaagcattgggaagccatcaagaaagccgccgaaggccgccctgcgccgttcctg
attcaccaggaaagcaacgttatcgtgcgcgccttccgcgattacctgcgtcctgatatc
ggcgaaatcctgatcgataacccgaaaattctcgatctggcgaaagagcacatcgccgcg
ctgggccgtccggacttcagcagcaaaattaaaatgtacagcggcgaaatcccgctgttc
agccactaccagattgagtcgcagatcgaatccgccttccagcgtgaagtgcgcctgcct
tccggcggctccatcgttatcgacacgaccgaagcgctgaccgcgatcgacatcaactcc
gcacgcgccacccgcggcggcgatatcgaagagaccgcgttcaacaccaacctggaagcg
gcggatgaaattgcccgccagctgcgcctgcgtgacctcggcggcctgatcgtcatcgac
tttatcgatatgacgccggtgcgccaccagcgcgaggtggaaaaccgcctgcgtgatgcg
gtgcgtcaggaccgtgcgcgcattcagatcggccgtatttcccgcttcggcctgctggag
atgtcccgccagcgcctcagcccgtcgctgggcgaatccagccaccacgtctgcccgcgc
tgtaacggcaccggcaccgtgcgcgacaacgaatcgctggcgctgtccatcctgcgtctg
attgaagaagaagcgctgaaggaaaacaccaaagaagttcacgccatcgtgccggtacag
gtcgcctcttacctgctgaacgaaaagcgtgaatccgtcagcgccattgaaaaacgccag
gccggcgtgaaagccgtgatcgtgccgaacgatcagatgcaaacgccgcattactcggta
ctgcgcgtgcgcaaaggcgaagaaacgtcaaccctgagctatctgctgccgaagctgcat
gaagaagagatggtgcagccgttggaagaaacgccgatggagcgcaagcgtcctgagcaa
ccggcattggcctccttctctctcggcgccgacgcaccgccgccggctgctgaatccgcc
ccggtgaaaaaaccggccgccagccagccgagcgcgccggcagccgccgcagcgcctggc
ctgctgagccgcttcttcagcggtctgaaatcgctgttcgccggtgaagaaccacagccg
gcagccgaggaaaaaccggctgaaaccgcgaagagcagcagcggcgaaaaccgccgtcag
gatcgtcgcagccagcgtcgtcagggttccggccgtaaagaacgcggcgagcgtggtgaa
cgtagcgagcgcaatgagcgcggcgagcgtaaagaacgcagcgagcgcaaagaacgcggc
gaaggccgtgagcgtgacaaccgtgaaggacgcgatcgcgataaccgcgagtcgcgtgac
gagcagcgccgcaaccgtcgtaacgccgcgaataatgcgccggcgagcgccgatgcgccc
gttgttgatgaagccgctaaagcgcagcgcgaagagcaacagcagcagcgccgcgagcag
cgcgccgagcgtcagcgccgtcgtcaggaagagaagcgccaggcgcagcaagaagtgcaa
cagctggagaaagccgccgtcgaaccggtagcggccgctgaagaggataaggaagaccgc
catcagcagccggcgcagcgtcgtcaacgccgccagctgtcgcagaaggtgcgtatcctg
tccgcggaagaagagctgcagcgcgctgcagaagaactgttggcaccaaaagcgccggcg
gcaaccgctgaggaaagcaaagcgccagcggcagacgacagcatcaagctgctgccggaa
accgtcgccgtgaccggtgaggaagaagcgcaggaaaaccgtaacggtgaaaacggcatg
ccgcgtcgctcacgtcgttcaccgcgccatctgcgcgtgagcggtcagcgtcgccgtcgt
taccgcgacgagcgttacccaacccagtcgccgatgccgttgacggcagcctttgcttcg
ccggaaatggcctctggcaaggtatgggtcggttaccctgtcacaacagctgcgcaaccg
gttgaagagacagaagttaaatcgccatccgccgacatcgttgagcagcagccggcagcg
gaaaccgccgccagcgttgccgcgcctgtcatcgccgctgctcaggatgaggttcaggca
ccagccgctgctgcggccgccgccagcgtcgagccggaggaaagcacgccagccgccgct
ctgccgcaggaagaggtcaaagcgcctcagccggcagccgtagaagcaccggccgacgtc
gccagcgatgcagaacctgtcgctgaagccgcaccgtctcagcctgaagagcagcctgct
gcgcctgtcgccgttgcgccggcagccgacaacgctgctgctgaagaacaagcggtgaca
gaacaggccgttgaggaagcggccattgcggcaccagccgaagcggtcgtcaccgagcct
gctccgcagccggtaagcgatgagacggcggcaacccctgcgccagccatcgtggcccag
ccggcagagacgcgctacaagcacatcgccagcgcgccgatgaccaaagcgccggcaccg
gcttaccagccggaagcgccgaagcacagcgactggcagcgcccggcgtttaatttcgac
ggcaaaggcagcgccggcggccactcggcagtaagccaggctaccgccccggccaccaag
ccgcagccggttaacgactaa
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