Serratia rubidaea: AXX16_3837
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Entry
AXX16_3837 CDS
T04417
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srz
Serratia rubidaea
Pathway
srz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXX16_3837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srz03019
]
AXX16_3837
Enzymes [BR:
srz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXX16_3837
Messenger RNA biogenesis [BR:
srz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXX16_3837
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AML59528
UniProt:
A0A448S0E2
LinkDB
All DBs
Position
complement(4144194..4145561)
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AA seq
455 aa
AA seq
DB search
MSFETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVL
QLLSSKPSPVKGRRPVRALILTPTRELAAQIGENVSAYSQHLRLRSLVVFGGVSINPQMM
KLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAGKLLHNPASVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDI
ERLLKREVPRIALPGYEPDPTIKAEPIINGRQQRGGRGNGNPGRGNGNGGGQRAANGGGQ
RDNRGNGAQRARPQGEGKPRSGAPARRPRRSRPAE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaactctcggcttgaatgccgaaatcctgcgtgccgttgaagaacagggc
tatcgcgaacctacgccgattcaacgtcaggcgatcccggtggtgctggaagggcgcgac
ctgatggccagcgcccagaccggcaccggcaaaaccgccggctttaccctgccggtattg
cagctgctgagcagcaaaccgagcccggtgaaaggccgccgcccggtgcgcgcgctgatc
ctgaccccgacccgtgagttggcggcgcagatcggcgagaacgtcagcgcctacagccag
cacctgcgcctgcgttcgctggtggtgttcggcggcgtcagcatcaacccgcagatgatg
aaactgcgcggcggggtggatattctgatcgccaccccgggccgtctgctggatctggag
catcagaacgccgtcgatctgtccaacgtggaaatcctggtgctggacgaagccgaccgc
atgctggatatgggctttatccacgatattcgccgcgtgctggccaagctgccggcgaag
cgtcagaacctgctgttctccgccaccttctccgacgatatcaaggcgctggccggcaaa
ctgctgcacaacccggcgtcggtggaagtggcgcgccgcaataccgcctccgagcaggtg
acgcagcacgtgcactttgttgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggcgtcaggtgctggtgtttacccgcaccaagcacggcgccaaccat
ctggccgaacagctgaataaagacggcatcaccgccgccgcgatccacggcaacaaaagc
cagggcgcgcgtacccgggcgctggccgattttaaagacggccgcatccgcgtactggtg
gcgaccgatattgcggcgcgtggtctggatatcgaccagctgccgcacgtggtgaactat
gaactgccgaacgtgccggaagactacgtgcaccgtatcggccgtaccggccgggcggaa
cgcaccggcgaagcgatctcgctggtatgtatcgatgaacacaagctgctgcgcgatatc
gaacgcctgctgaagcgtgaggttccgcgcatcgccctgccgggctatgagccggatccg
accatcaaggcggagccgatcatcaatggccgccagcagcgcggcggccgtggcaacggc
aacccggggcgcggcaacggtaacggcggcggccagcgtgcggccaacggcggcggtcag
cgtgacaaccgcggcaacggcgcccagcgcgcccgtccgcagggcgaaggcaaaccgcgc
agcggcgcgccggcccgtcgtccgcgtcgcagcagaccggcggagtaa
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