KEGG   Serratia rubidaea: AXX16_3851
Entry
AXX16_3851        CDS       T04417                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
srz  Serratia rubidaea
Pathway
srz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:srz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AXX16_3851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srz03400]
    AXX16_3851
DNA repair and recombination proteins [BR:srz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AXX16_3851
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AXX16_3851
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 ABC_tran_CTD PRDA1_C DUF87 APHB_HrpA
Other DBs
NCBI-ProteinID: AML59542
LinkDB
Position
complement(4157211..4159223)
AA seq 670 aa
MSKLFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLAELQ
YTRNDQAFQRATFRVRGEVIDIFPAESDELALRVELFDDEVERLSLFDPLTGQVDRVVPR
FTIYPKSHYVTPRERILQAMEEIRTDLAERRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRQPGEPPPTLFDYLPADGLLVVDESHVTVPQIGAMFKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEAQAPQSIYVSATPGKYELEKSGGEVIDQVVRPTGLLD
PVVEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDKITDSMAKAIGETERRRAKQQAYNEANGIVPQGLNKKIADILQLG
QPSPRGKGKGKGKAAESAAQYQTLTPKALEQKIRDLEAQMYTHAQNLEFEQAAALRDEIH
QLREQFIAIS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagtaaattattcaaactgcattcagacttcaaaccggccggcgatcagccggaagcg
atccgcaagctggaagaggggctggaggacgggctggcgcaccagacgctgctgggggtg
accggttcggggaaaaccttcaccatcgccaacgtgattgccgatctcaaccggccgacg
atggtgctggcgccgaacaaaacgctggcggcgcagctgtacggtgagatgaaagcgttc
ttcccggagaatgcggtggagtattttgtctcttactacgactattaccagccggaagcc
tacgtgcccagctccgacacctttatcgaaaaagacgcttcggtgaacgaacatatcgag
cagatgcgtctttccgccaccaaggcgctgctggagcggcgcgacgtggtggtggtggcc
tcggtgtcggcgatctacggcctgggcgatccggatctgtatctcaagatgatgctgcac
ctgacccagggcatgctgatcgaccagcgttcgatcctgcgccggctggccgagctgcag
tatacgcgcaacgatcaggccttccagcgcgccaccttccgggtgcgcggcgaggtgatc
gacatctttccggcggaatccgacgagctggcgctgcgcgtcgagctgtttgacgatgag
gtggagcgcctgtcgctgtttgacccgctcaccggccaggtggatcgggtggtgccgcgt
ttcaccatctacccgaagtcgcactacgtaacgccgcgcgagcgcatcctgcaggcgatg
gaggagatccgcacggatctggcggagcggcgcaaggtgctgctggccaacaacaagctg
ctggaagagcagcggctgtcgcagcgcacccagttcgatctggagatgatgaacgagctg
ggctactgctcgggcattgaaaactactcgcgctacctctccggccgccagccgggcgag
ccgccgccgacgctgttcgactacctgccggccgacggcctgctggtggtggacgaatcg
cacgtcaccgtgccgcagatcggcgcgatgttcaagggcgaccgctcgcgcaaggaaacc
ctggtggagtacggttttcgtctgccgtcggcgctggataaccggccgatgcgctttgag
gagtttgaggcgcaggcgccgcagtcgatttacgtctcggccacgccgggcaaatatgag
ctggagaaatccggcggcgaggtgatcgatcaggtagtgcgcccgaccggcctgttggat
ccggtggttgaggtgcggccggtggcgacgcaggtcgacgatctcttgtccgagatccgc
aagcgcgtggcgatcaatgagcgggtgctggtgacgacgctgaccaaacgcatggcggaa
gacctgaccgaatatctggaagagcacggcgagcgggtgcgctatctgcactcggatatc
gataccgtcgagcgggtggagatcatccgcgatctgcgcctgggcgagtttgacgtgctg
gtcggcatcaacctgctgcgggaaggactggatatgccggaagtgtcgctggtggcgatt
ctggacgcggataaagagggcttcctgcgctccgaacgctcgctgattcagaccattggc
cgcgccgcccgtaacctgaacggcaaggcgattctgtacggcgacaagatcaccgactcg
atggccaaggcgattggcgaaaccgaacggcgtcgcgccaaacagcaggcgtataacgaa
gccaacggcatcgtgccgcaggggctgaacaagaagatcgccgatattctgcagctgggc
cagccgtcaccgcgcggtaagggcaaagggaagggcaaggcggcggagagcgcggcgcag
tatcagacgctgacgccgaaagcgctggagcagaaaattcgcgatctggaagcgcagatg
tacacccacgcgcaaaatctggagttcgaacaggcggcggcgctgcgcgatgagatccac
cagctgcgcgagcagtttatcgccatctcctga

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