Stakelama saccharophila: RPR59_01615
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Entry
RPR59_01615 CDS
T10187
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ssaa Stakelama saccharophila
Brite
KEGG Orthology (KO) [BR:
ssaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RPR59_01615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssaa03019
]
RPR59_01615
03009 Ribosome biogenesis [BR:
ssaa03009
]
RPR59_01615
04131 Membrane trafficking [BR:
ssaa04131
]
RPR59_01615
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssaa04147
]
RPR59_01615
Messenger RNA biogenesis [BR:
ssaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RPR59_01615
Ribosome biogenesis [BR:
ssaa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RPR59_01615
Membrane trafficking [BR:
ssaa04131
]
SNARE
SNARE associated proteins
Others
RPR59_01615
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RPR59_01615
Exosome [BR:
ssaa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RPR59_01615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_33
AAA_5
AAA_22
CDC48_2
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
AAA_28
AAA_18
AAA_7
NPHP3_N
RNA_helicase
Zeta_toxin
ABC_tran
Mg_chelatase
AAA_17
AAA_19
DUF815
AAA_30
AAA_3
Sigma54_activat
AAA_11
TsaE
AAA_24
bpMoxR
PhoH
Parvo_NS1
NB-ARC
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
WNO53985
LinkDB
All DBs
Position
340478..342766
Genome browser
AA seq
762 aa
AA seq
DB search
MADDESEPRKLQVANARPEDSGRGLAHLPRSMMAAMALSEGDVIEIVGKRATPAFAVYPY
PEDEGLEILRIDGLQRANAGVGSGEFVEVRKAEAKPATRVVFAPAQKNLRLQGSTDAIKR
TFAGRPLCQGDVVATVGQKPVGNIPPEVARHLRAPAYALQEIRLNVVSASPKGVVHIDAD
TEVELRADYEEARESRRADVTYDDIGGMAGTIDQLREMVELPLRYPELFQRLGVDPPKGV
LLHGPPGTGKTRLARAVANESDAQFFLINGPEIMGSAYGESEKRLREVFEEATKSAPSIV
FIDEIDSIAPKRDKVQGEAEKRLVAQLLTLMDGLEARANLVVIAATNRPEAIDEALRRPG
RFDREIVVGVPDERGRREILGIHTRGMPLADNVDIGELARTTYGFVGADIAALTREAAIE
AVRRIMPKLNLSEGTIPPEVLDSLSVDRNDFLEALKRIQPSAMREVMVQAPQVRWGDVGG
LDEAQMRLKEGVELPLKEPEAFRRLGIRPAKGFLLFGPPGTGKTLLAKAVAREAQANFIA
TKSSDLLSKWYGESEQQIAKLFARARQVAPCVIFIDELDSLVPARGGGLGEPQVTERVVN
TILAEMDGLEELQSVVVIGATNRPNLVDPALLRPGRFDELVYVGVPDATGRERILTIQAA
KMPLASDVDLGAIAARAERFTGADLEDVVRRAGLVALRESRENTHVTMAHFEKALEEGRA
SVTPEMEQEYRQMAAKLKQEAAAIQPIGFITPGMLEHRPREG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgaatccgaacccagaaaattgcaggtggcaaatgcccgtccggaggat
tccgggcgcggactggcgcatctgccccgatcaatgatggccgcaatggcgctgagcgaa
ggcgacgtgatcgaaatcgtcggcaagcgcgccacgcccgccttcgccgtttacccctat
cccgaggatgagggactggagatcctgcgcatcgacggcctgcagcgcgccaatgccggt
gtcggatcaggcgaattcgtcgaagtgcgcaaggccgaggcgaagccggcgacgcgcgtc
gtctttgcgcccgcacagaagaatctgcggctccagggctccaccgacgcgatcaagcgg
accttcgccgggcggccgctgtgccagggcgacgtggtggcgacggtggggcagaagccg
gtcggcaacatcccgcccgaggttgcccgccatctgcgcgcgccagcctacgcccttcag
gaaatccgcctgaacgtcgtctcggcgagccccaagggcgtggtccatatcgacgccgat
accgaagtcgagctgcgcgccgattacgaggaagcgcgcgaaagccgccgcgccgacgtc
acctatgacgatatcggcggcatggccggcacgatcgaccagttgcgcgagatggttgaa
ctgccgctgcgctatcccgaactgttccagcggctgggcgtcgatccgcccaagggcgtg
ctgctgcacggcccgccgggcaccggcaagacgcggctggcacgcgccgtcgccaacgaa
tcggacgcgcagttcttcctgatcaacgggccggaaatcatggggtccgcctatggcgag
tcggaaaaacggctgcgcgaggtgttcgaggaggcaaccaagtccgcgccgtcgatcgtc
ttcatcgacgaaatcgactcgatcgcgcccaagcgcgacaaggtgcagggcgaggcggag
aagcgcctcgtcgcgcagctcctgaccctgatggacgggctggaggcgcgcgccaacctc
gtcgtgatcgccgccaccaaccggccggaggcgatcgacgaggcccttcgccggcccggc
cggttcgaccgcgagattgtcgtcggcgtacccgacgaacgcggccggcgcgagatcctg
ggcatccacacccgcggcatgccgctggcggacaatgtcgacatcggtgaactggcgcgc
accacctatggcttcgtcggcgccgacatcgcggcactcacgcgcgaagcggcgatcgag
gcggtgcgccgcatcatgccgaagctcaacctgtcggaaggcacgatcccgcccgaggtg
ctcgattcgctgtcggtcgaccgcaacgattttctcgaggcgttgaagcgcatccagccg
tccgcgatgcgcgaggtgatggtgcaggcgccgcaggttcgctggggcgacgtcggcggc
ctggatgaagcgcagatgcggctgaaggaaggcgtggaactgccgctgaaggaaccggag
gcgttccgccggctcggcattcgtccggccaagggctttctgctgttcggcccgcccgga
accggcaagacgctgctcgccaaggcggtcgcgcgcgaggcgcaggcgaacttcatcgcc
accaagtcctccgacctcctgtcgaaatggtatggcgagagcgagcagcagatcgccaag
ctgttcgcccgcgcgcgtcaggtggcaccgtgcgtgatcttcatcgacgaactcgattcg
ctggtgcctgcgcgcggcggcggcctgggcgaaccgcaggtgaccgagcgcgtggtcaac
accatcctggccgaaatggacgggctggaggaattgcagtcggtcgtggtgatcggtgca
accaaccggccgaacctggtcgatccggcgctgctgcgtcccggacggttcgacgagctg
gtctatgtcggcgtgcccgatgccaccgggcgcgagcgtattctcaccatccaggcagcg
aagatgccgctcgcgagcgatgtcgacctgggtgccatcgcagcgcgtgccgaacgcttc
accggcgccgatctggaggacgtggtgcgccgcgccggcctggtcgcgctgcgcgaatcg
cgcgagaacacgcatgtcaccatggcccatttcgaaaaggcgctggaagagggccgcgca
tccgtcacgcccgaaatggaacaggaataccggcagatggcggcgaaactgaagcaagag
gcggcggcgatccagccgatcggcttcatcacgcctgggatgctggagcatcggccgcgc
gaaggctga
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