Stakelama saccharophila: RPR59_02940
Help
Entry
RPR59_02940 CDS
T10187
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssaa Stakelama saccharophila
Pathway
ssaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPR59_02940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssaa03019
]
RPR59_02940
03009 Ribosome biogenesis [BR:
ssaa03009
]
RPR59_02940
Enzymes [BR:
ssaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPR59_02940
Messenger RNA biogenesis [BR:
ssaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPR59_02940
Ribosome biogenesis [BR:
ssaa03009
]
Prokaryotic type
rRNA processing factors
RPR59_02940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WNO54234
LinkDB
All DBs
Position
complement(651711..654296)
Genome browser
AA seq
861 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDRDALLAEEAEHAAEEAALRAEEEVDEDGEGDLEVL
ERPSDEDEAEAEAEDGDQAGNRGGKRDKSAVEALRQRRMSLRKRYKIQDVIRRRQVLLVQ
VVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISSAADRKRLKTIMAEMKLPP
TMGCIVRTAGLQRTKTEIKRDFDYLARLWDGIREATLKSTAPCPVYGDSDLIKRAIRDIY
NRDIGEVIVEGEDGYRQAKDFMKLLMPSHARRVKQYSDAVPLFQRHHVEDQLGAMYHPVV
QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLV
VIDFIDMDHSSNVRKVEKAMKEALKADRARIQVGRISAFGLMEMSRQRLRTGVLEASTRQ
CPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSVLTLRASQEAAFYVLNKKRADIAEIE
ERYGVSVEIVSDGEIEGARMSVEASGPPPAHAPKLDQIVEYNDDDLPEETPEEEETEAES
HDEEGEGARRRRRRRRGRRNRGGPGEEERDSDETSEDGDEESEQETAESAGEEDSDDDKP
KRRRRGRRGGRRNRGRKAEDENGVEDRDSVEQQDAPAAAAPAEPVTEAAETPAEPESAPE
AAEAKPKRTRRRPKARTESEAPAEVSETVEAAEEKPKPKRTRRKKKTVDDVAADADAVPP
AKAEAEAEAKEAPNARGRGGRRKKAETEAETVEQDLEPAAPSAPAEEADAGDGASAAVDG
GKADADEEAKPRRGWWQRTFG
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcgtatgttgatcgacgcacgccaccgggaggaaacccgcgtggccgtcgtc
aagggaaaccggatcgaggagtttgatttcgagtccgcggagcgaaagcagctcaagggc
aatatctatctggcgaaagtaacccgcgtcgaaccctcgctgcaagcggcgttcgtcgat
tatggcggcaaccgccacggcttcctcgccttttccgagattcaccccgattattatcag
atccccaaggaggatcgcgacgccctgctcgccgaagaggccgagcatgccgccgaggag
gccgcgctgcgcgccgaagaggaggtcgacgaggacggcgagggcgatctcgaggtgctc
gagcggcccagcgacgaggatgaagccgaggcggaggccgaagacggcgaccaggccggg
aatcgcggcggcaagcgcgacaagagcgcggtcgaggcactgcgccagcgccgcatgtcg
ctcaggaagcgctacaagatccaggacgttatccgccggcggcaggtactgctggtccag
gtcgtcaaggaagagcgcggcaacaagggcgcggcgctcaccacctatctgagccttgcc
ggccgctattgcgtgctgatgccgaacaccgcccatggcggcggcatttcgcgcaagatc
tcgtccgctgccgaccgcaagcggctgaagacgatcatggcggagatgaagctgccgccg
accatgggctgcatcgtacgcaccgccgggctgcaacgcaccaagaccgagatcaagcgc
gacttcgactatctggcgcggctgtgggacggcattcgcgaggcgacgctgaaatcgacc
gcgccgtgcccggtctatggcgacagcgacctcatcaagcgcgcgatccgcgacatctac
aaccgcgacatcggcgaggtgatcgtcgagggcgaggacggctaccgccaggccaaggac
ttcatgaagctgctgatgcccagccatgcgcggcgcgtgaagcagtattcggacgcagtt
ccgctgttccagcgccatcacgtcgaagaccagctcggcgcgatgtaccacccggtcgtg
cagctcaaatcgggcggctatctggtcatcaatccgaccgaagcgctggtgtcgatcgac
atcaattccggcaggtccacgcgcgagcacaatatcgagcagaccgcgaccgcgaccaac
ctggaagcggcgcaggaaatcgcccgtcagctccgcctgcgcgatatggcgggtctggtc
gtcatcgatttcatcgacatggatcattcgtccaatgtccggaaggtcgaaaaggcgatg
aaggaggcgctgaaggccgatcgcgcgcgcatccaggtgggccgcatctccgccttcggc
ctgatggagatgagccgccagcgcctgcgcacgggcgtgctggaggcctccacccgccag
tgcccgcattgcgagggcaccggcctcgtccgcacggcgtcgtcggcgggcctgtcggcg
ctgcgcctgatcgaggacgaggcggcgcgcggccgcggctcggtgctgacgctgcgcgcc
agccaggaggccgctttctacgtgctcaacaagaagcgcgccgacatcgccgagatcgaa
gaacgctacggcgtttccgtcgagatcgtgtcggatggggagatcgagggcgcccgcatg
tcggtcgaggcttccggcccgccgcccgcacatgcgcccaagctcgaccagatagtcgaa
tataacgacgacgacctgcccgaggaaacgcccgaggaggaagagaccgaagccgaatcg
cacgacgaggagggcgaaggcgcacgccgccgccgccgccgccgccgtggccggcgcaat
cgcggcggtccgggcgaagaggaacgcgactccgacgaaacgtccgaagacggcgatgag
gaatccgagcaggaaacggccgaatccgccggtgaagaggacagtgacgacgacaagccg
aagcgccgccggcgcggacgtcgcggcggacgtcgcaatcgcggtcgcaaggcggaggac
gagaacggcgtcgaggatcgggattcggtggagcagcaggacgcgcctgccgccgctgca
ccggccgagccggtgacggaagccgccgaaacaccggccgaaccggaatcagccccggaa
gcggccgaggccaagcccaagcgcacgcgtcgtcggcccaaggcacggacggaaagtgag
gcgcccgcggaagtctcggaaaccgtggaggctgcggaggaaaagccgaaacccaagcgt
acgcgccgcaagaagaagaccgtcgacgacgtcgcggcggacgcggacgccgtgcctccg
gccaaggccgaagcggaagcagaggcgaaagaagctcccaatgcgcgcggtcgcggtggg
cgccgcaagaaggcggagaccgaagcggaaaccgtcgagcaggatctcgagcctgcggcg
ccatctgcgccggcggaggaagccgatgccggtgacggagcgtccgccgcggtggacggc
ggcaaggccgacgcggacgaggaagcgaagccgcggcgcggctggtggcagcgcaccttc
ggctga
DBGET
integrated database retrieval system
