Stakelama saccharophila: RPR59_07245
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Entry
RPR59_07245 CDS
T10187
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ssaa Stakelama saccharophila
Pathway
ssaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssaa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RPR59_07245 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssaa03021
]
RPR59_07245 (rpoD)
Transcription machinery [BR:
ssaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RPR59_07245 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WNO55030
UniProt:
A0ABZ0BD41
LinkDB
All DBs
Position
complement(1534503..1536536)
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AA seq
677 aa
AA seq
DB search
MAKANTADVAENQDQGDAPLIDLNEGSIKKMITRARKRGYITVDQLNEMLPQDQMSSEQI
EDIMAQLNEMGVNVVENEEAGEDGDRDDDTPDEIDAEDGATAKKPATETKKKETVDRTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSDALNEGEM
QLREILDLDAMLTKDPAPEAMSDDDEADGDGEISEKTAGPSFKEEDEVEDESEDDEEDSM
TERRAKRNDDDDEEDNTLSLAQMEETLKPQALEKFANITAIYKKFSAMQSKRLDAMASGG
ELSAAEEKKYQKLREDLTAEVESVQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAERHK
VKRKDFLDAYVDHELDEGWLGSVAGIDKKWKAFTENEGDAVDRIRTEIAEISQQTGMALG
EFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGR
EPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDSAI
QSNLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKMRSFLDQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggcgaatacggcggatgtcgctgaaaatcaggatcaaggcgacgcgccgctg
atcgacctcaacgaaggttcgatcaagaagatgatcacccgcgcgaggaagcgcggctat
atcacggtcgaccaactcaacgagatgctgccccaggaccagatgtcttccgagcagatc
gaggacatcatggcgcagctcaacgagatgggcgtgaatgtcgtcgagaacgaggaagcc
ggcgaggacggcgaccgcgacgacgacacgccggacgaaatcgacgccgaggacggcgcc
acggcgaagaagccggcgaccgagaccaagaagaaggaaacggtcgatcgaaccgacgat
cccgtgcgcatgtacctgcgcgagatgggcgcggtcgaactgctcagccgcgagggcgag
atcgcgatcgccaagcgtatcgaggccggtcgcgacacgatgatcctggggctttgcgaa
agtcccattaccttcaacgccatcatcggctggtccgacgcgctcaacgaaggcgaaatg
cagttgcgcgagatcctcgatctcgacgccatgctgaccaaggatcccgcgcccgaggcc
atgtccgacgatgacgaggcggacggcgacggcgaaatctccgaaaagaccgccggtcct
tccttcaaggaagaggacgaagtcgaggacgagtccgaagacgacgaagaggactcgatg
acggaacgtcgtgccaagcgcaacgacgatgacgacgaggaggacaacaccctcagcctc
gcccagatggaagagacgctgaagccgcaggcgctcgagaagttcgcgaacatcaccgcg
atctacaagaagttctcggccatgcagtcgaagcggctcgacgcgatggcctccggcgga
gagctgtccgcggccgaggaaaagaaatatcagaagctgcgcgaggacctgacggccgag
gtcgaaagcgtccagttccaccaggcgaagatcgaatatctcgtcgaccagctctacagc
ttcaaccggcgcctgactgcgctgggcggtcagatgctgcgtcttgccgagcgccacaag
gtcaagcgcaaggactttctcgacgcctatgtcgatcacgaactcgacgagggatggctc
ggctcggtcgcgggcatcgacaagaagtggaaggcgttcaccgagaatgagggcgatgcg
gtcgaccgcatccgcaccgagatcgccgaaatctcgcaacagaccggcatggcgctgggc
gagttccgccgcatcgtcaacatggtgcaaaagggcgagcgcgaggcgcggatcgcgaag
aaggagatggtcgaggccaatctgcgcctggtgatctccatcgctaagaaatacaccaat
cgcgggctgcagtttctggacctgattcaagagggcaatatcggcctgatgaaggcggtc
gacaagttcgagtatcgccgcggctacaaattctcgacctatgcgacctggtggattcgc
caggcgatcacccgctccatcgccgatcaggcgcgcacgatccgcatcccggtccacatg
atcgagacgatcaacaagctggtccgcaccagccgccagttcctccacgaacaggggcgc
gaaccgacgcccgaggaaatggcggaacgcctttcgatgccgctggagaaagtgcgcaag
gtgatgaagatcgccaaggagccgatctccctcgaaacgccgatcggcgacgaggaggac
agccatctcggcgatttcatcgaggacaagaacgcggtcattcccgtggattcggcgatc
cagtcgaacctgaaggaaacggtgacgcgcgtgctcgccagcctcaccccgcgcgaggag
cgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaggaagtc
gggcagcagttcagcgtgacgcgcgaacgtattcgccagatcgaggcgaaggcgctcagg
aagctcaagcatccctcgcgcagccgcaagatgcgcagcttcctcgaccagtag
DBGET
integrated database retrieval system
