Stakelama saccharophila: RPR59_11920
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Entry
RPR59_11920 CDS
T10187
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssaa Stakelama saccharophila
Pathway
ssaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPR59_11920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssaa03021
]
RPR59_11920 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssaa03400
]
RPR59_11920 (rpoC)
Enzymes [BR:
ssaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPR59_11920 (rpoC)
Transcription machinery [BR:
ssaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPR59_11920 (rpoC)
DNA repair and recombination proteins [BR:
ssaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPR59_11920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
YnfE
Phage_cement_4
Motif
Other DBs
NCBI-ProteinID:
WNO53148
UniProt:
A0ABZ0B7A7
LinkDB
All DBs
Position
2558664..2562953
Genome browser
AA seq
1429 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAG
IGAEAVKQMLMELDLEAEREDLLKELSETKSELKPKKIIKRLKVVESFIESGNRPEWMIL
DIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYITMEKEGEPGEGMILSDIAEVHQALDS
GAVTLHSKITARVPQTDEDGNTYMKRYQTTPGRMLLGEKLPRTHKVPYEIINRLLTKKDV
GDVIDEVYRHTGQKETVLFADGIMTLGFQHAFKAGISFGMDDMIIPGAKEKLVDETREQV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAGAMMDEIKAVKKYEDGPMAGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIVESDCGTERSLEMKAIVQGGSTIASLGERILG
RTTAEDIVDAKTDEVVIPSGTLLDEPMVAKIDGLGIQSVKIRSPLVCEAKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPADGKIEYRD
LRIIEDSRGRKVCISRSGELAILDTEGRERAVHRIPYGATLIFNDGHVVEKGDRMAEWDP
FTAPVITETGGTVKFQDLIENKTLTEQVDEATGITQRVVTEYRAPTRSKEDLRPRITLLD
ENSGEAARYMLQPGTVISVDDGATVQAGDVVARVARESAKTRDITGGLPRVAELFEARKP
KENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGDLVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILEVLGIEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGG
DTTLLPGEQVDRDEMDAVNAKLAKNEQPAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTDAAVQGKQDALTGLKENVIVGRLIPAGTGAGMNRARIAANSRDAALRAQQRKLQEALI
AAESAEQEHEAELAQDPVDATVTADALENVETSGDGSDEAAGEYLNKED
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgcgaacccggtggccaagccggaaaccttcgaccagatc
cagatcggcatcgccagccccgagcgcatccggtcctggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atttttggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaggtcaccgtctccaaggtccgtcgtgag
cggatgggccatatcgagctggccgcaccggtcgcgcacatctggttcctgaaatcgctg
cccagccgcatcggcctgctgctcgacatgcagttgaagcagctcgagcgcgtgctgtat
ttcgaagcctatatcgtgatcgagcccggcctgacgccgctcgaaaagttccagctcctc
accgaggacgaactgctcgaagcgcaggacgaatatggcgaagacgcgttttcggccggc
atcggcgccgaggccgtcaagcagatgctgatggaactcgacctggaggccgagcgcgag
gatctgctcaaggaactgtccgagacgaagtccgaactgaagccgaagaagatcatcaag
cggctgaaggtcgtcgagagcttcatcgaatccggcaaccgcccggaatggatgatcctc
gacatcgtgccggtcatcccgcccgagttgcgcccgctcgtcccgcttgatggcggccgc
ttcgcgacgtcggacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctcatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaatcggtcgatgcgctgttcgacaacggtcgtcgcggccgcaccatcaccggcgcc
aacaagcgtccgctgaagtcgctttccgacatgctcaagggcaagcagggccgcttccgg
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccgggcct
gagctgaaattgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctatgcccggctcgacgccaagggtctgtccatgaccctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaagtcattcgcgagcac
ccggtcctcctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgaaccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gatttcgatggcgaccagatggccgtgcacgtaccgctgagcctcgaggcgcagttggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctttcgccggcgaacggcaagccgatc
atcgtgccgtcgcaggatatggtgctgggcctctattacatcacgatggaaaaggagggt
gaacccggcgagggcatgatcctttccgacatcgcggaggtccatcaggcgctcgattcc
ggcgcggtgacgctgcactcgaagatcacggcacgcgtgccgcagaccgacgaggacggc
aacacctacatgaagcggtatcagaccacgccgggccgtatgctgctgggcgaaaagctg
cccaggacgcacaaggtgccctacgagatcatcaatcgcctcctcaccaagaaggatgtc
ggcgacgtgatcgacgaggtctatcgccacaccggccagaaagagaccgtgctgttcgcc
gacggcattatgacgcttggcttccagcatgcgttcaaggccggcatctcgttcggcatg
gatgacatgatcatccccggcgccaaggaaaagctggtcgacgagacccgcgagcaggtg
aaggattacgagcagcaatatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggcgatcaggtggcgggcgccatgatggacgagatc
aaggcggtcaagaagtatgaggacggcccgatggccggccgcgagaagccgatcaattcg
atctacatgatggcgcactccggtgcgcgtggcagccaagcgcagatcaagcagcttgcg
ggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcg
aacttcaaggaaggcctgaccgtcctcgaatacttcaactccacccacggcgcccgcaag
ggtctggccgacaccgcgctcaagacggcgaattcgggctatctgacccgccgtctggtc
gatgtcagccaggactgcgtcatcgtcgagagcgattgcggcacggaacgttcgctggag
atgaaggcgatcgtccagggcggcagcaccatcgcctcgctgggtgagcgtattctcggc
cgcaccacggcggaggacatcgtcgatgccaagaccgacgaggtcgtcatcccgtccggc
accctgctggacgaaccgatggtggcgaagatcgacggtctgggcatccagtccgtgaag
atccgctcgccgctggtgtgcgaagccaagatcggcgtctgcggcaaatgctacggccgt
gaccttgctcgcggcacgccggtgaatatcggcgaggcggtcggcgtcatcgcggcgcag
tcgatcggcgagccgggtacgcagctcacgatgcggaccttccacatcggcggtgcggca
cagctcaacgagcagtccaacctcgaagcgccggccgacggcaagatcgagtatcgcgat
ctccgcatcatcgaggactcgcggggccgcaaggtctgcatctcgcgctcgggcgaactc
gccatcctcgataccgagggccgcgagcgggcggtgcatcgcattccctatggcgccacg
ctgatcttcaacgacgggcacgtcgtcgaaaagggcgaccggatggccgaatgggatccg
ttcaccgcgccggtcatcaccgaaacgggcggcacggtgaagttccaggacctcatcgag
aacaagacgctgaccgagcaggtcgacgaagcgacgggcatcacccagcgcgtcgtcacc
gaataccgcgccccgacgcggtccaaggaagacctgcggccgcgcatcacgctgctcgac
gagaattcgggcgaggccgcacgctatatgctgcagccgggcacggtgatctcggtcgac
gacggtgccacggtgcaggccggcgatgtcgtcgcgcgtgtcgctcgcgaatccgcgaag
acccgcgacatcaccggcggtctgccgcgtgtcgcggagctgttcgaggcgcgcaagccg
aaggaaaatgcgatcatcgccaaggtctcgggccgcgtcgtgttcggcaaggactacaag
gccaagcgcaagatcggcatccagcccgaggatggcggcgatctggtcgagtatctggtg
cccaagtcgaaggtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctg
atcggtggttcgcccgatccgcacgacattctggaagtcctcggtatcgaggcgctggcc
gaatatctggtcagcgagatccaggaggtttaccggttgcagggcgtgaagatcaacgac
aagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacggcggc
gacaccacgctgctgccgggcgagcaggtcgatcgcgacgaaatggatgcggtcaacgcc
aagctcgccaagaacgagcagcccgcccagggcaagcccgttctgctgggcatcaccaag
gccagcctgcagacgcgcagcttcatctcggctgcgtcgttccaggaaaccacccgcgtc
ctcaccgatgcggcggttcagggcaagcaggacgcgctgaccggcttgaaggaaaacgtc
atcgtcgggcggctgatcccggcgggaaccggtgcggggatgaaccgcgcccgtatcgcc
gccaacagccgcgatgcagcgcttcgcgcccagcagcgcaagctgcaggaagccctgatc
gcggccgaaagcgccgaacaggagcatgaggcagaactggcgcaggacccggtcgatgcg
accgtgaccgccgatgcgctcgaaaatgtcgaaacgtcgggcgacgggtccgacgaagcc
gccggcgagtatctgaacaaggaggactga
DBGET
integrated database retrieval system
