KEGG   Spiroplasma sabaudiense: SSABA_v1c00410
Entry
SSABA_v1c00410    CDS       T03048                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ssab  Spiroplasma sabaudiense
Pathway
ssab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ssab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SSABA_v1c00410 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssab03021]
    SSABA_v1c00410 (rpoB)
   03400 DNA repair and recombination proteins [BR:ssab03400]
    SSABA_v1c00410 (rpoB)
Enzymes [BR:ssab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SSABA_v1c00410 (rpoB)
Transcription machinery [BR:ssab03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SSABA_v1c00410 (rpoB)
DNA repair and recombination proteins [BR:ssab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SSABA_v1c00410 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AHI53453
UniProt: W6A8G3
LinkDB
Position
41440..45186
AA seq 1248 aa
MSYTVKKINQAVQRRDYTKVSGNLPLPNLIELQTDTFDWFQKKGIDEVFQEVFPVVSNDG
EIVLSLKDWEFKEPRIPVARAKEESKIFEAPIYANLTLTIRMESVEIEKENISGKTETFL
KGWLQEKIETTNVSFVKKVDKLYFYEVKNKTGDIETIQIELIDDNGEIVTANVDIYKVGE
VFFGDFPLMTDRGTFIVNGSEKVVVSQLVRSPGSYFKTELNRKNGETIYSADIIPSRGTW
LEFETDIKKQIDNKMTNALFVKIDKSRKTTATSLLTSLGMQKDEILNIFDNNSVIETTLE
QDNLTGEISIDWENQIQEIYKKIRQGETATADGACKYIFGLLFDKRKYDLTKAGRFKLQQ
KLAVKNRLLGKILAEDLIDKNGVVAFKMGTEVTKDVLKEVSKILEDGAMISKINFNSSID
SGNEIQKIKVFKDNDLRQETATIIGVTKTRSDEYINVPDIISTLSFALNLMDGIGEVDDI
DHLGNRRVRTVGELLQNQFRIGMMRIEKNVKEKISTTNPFKMKPSSIINNKPLTAIIGEF
FNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRERAGLEVRDVHPSHYGRICPIETPE
GPNIGLINNLSTYARINEYGFIETPYRKVENKKVVPDKYEYLTADQERDFIVAQANIKID
KDGTILDDNVVARYRGDDIMANAEDVDYVDVSPKQIVSIATSLIPFLENDDANRALMGAN
MQRQAVPLINPQSPVVGTGVEFEAARDSGDAIVAREDGIVKFLDSRKITLETKEGPKHYV
LSDFIRSNNGTAITHSPIVKLNQKVKKGDILADGPSMEKGELALGQNVVVAFTTWNGYNY
EDAVIVSERIVIDDRFTSIHIDEYTIEKRQTKQGPEEITREIPNISEASKKYLDESGIIA
IGSEVKVGDILVGKVTPKSQTQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVQSIR
RFSRADGYDLPADILEVIKVFVVQKRKIQEGDKMAGRHGNKGVISKILPVEDMPYMEDGT
PVDIMLNPQGVPSRMNIGQVLEIHLGMAAEKLGIKVSTPVFEGLNDEELQDIMAEAGMKN
YGKVTLIDGRTGEAFDKPIAVGVMYMLKLSHMVDDKLHARNVGPYSLITQQPLGGKAQNG
GQRFGEMEVWALEAYGAAYTLREILTIKSDDIRGRIKTYEAIVRSKEIPNPGIPESFNVL
TKEIMGLGFDMHMIDEFGNKVLINAYEDEILDDFTEYEKNNNRTISQA
NT seq 3747 nt   +upstreamnt  +downstreamnt
atgagttatactgtaaagaaaataaaccaagccgttcaaagaagggattatactaaagta
tctggtaatttaccattgccaaatttaatagagttacaaaccgatacttttgattgattc
caaaaaaagggaattgatgaagtttttcaagaggtatttcccgttgtttcaaatgatggt
gaaattgtactaagtttaaaagattgagaattcaaagaaccaagaattccagtagcaaga
gcaaaagaagaatcaaaaatttttgaggcgccaatttatgctaatttaacattaacaatt
cgcatggaaagtgtcgagattgaaaaagaaaatatttcaggaaaaaccgaaactttctta
aagggttgattacaagaaaaaatagaaaccacaaatgttagctttgttaaaaaggttgac
aaactttatttttatgaagtaaaaaataaaactggagatattgaaacaattcagattgaa
ttaattgatgacaacggtgaaattgtgacagcaaatgttgatatttataaagtgggagaa
gttttctttggagacttccctctaatgacagatcgcggtactttcattgttaatggtagt
gaaaaagttgttgtttctcaacttgtaagatctccaggtagttatttcaaaacagaacta
aaccgtaaaaacggagagacaatttattctgctgatatcatcccaagtcgaggtacttga
ttagaatttgaaacagatattaaaaaacaaatcgataataaaatgacaaatgcactattt
gttaaaattgacaaatcacgtaaaacaaccgcaacaagtcttttgacttcactgggaatg
caaaaagatgaaattttgaacatttttgataacaatagtgttattgaaacaactttagag
caagataatttaactggtgaaatcagtatcgattgagaaaaccaaatccaagaaatatac
aaaaaaattcgacaaggcgaaactgcaacagcagacggcgcatgtaaatacatttttggt
ttactatttgataaacgcaagtacgacttaacaaaagcaggacgttttaaattacaacaa
aaattagctgttaagaatcgtttactaggaaaaattctggccgaagatttaattgacaaa
aatggagtcgttgcctttaaaatgggtaccgaagttacaaaagacgttttaaaagaagtt
agcaaaattttagaagatggcgcaatgatttcaaaaattaactttaatagttcaattgat
tctggaaatgaaattcaaaaaattaaagtatttaaagacaatgatttaagacaagaaacc
gcaacaataatcggagtaacaaaaactcgcagtgatgaatatattaatgttcctgacatt
atatcaacactttcatttgcccttaacttaatggatggcattggagaagttgatgacatt
gatcacttgggaaatcgtcgtgtgcgaacagttggagaattattgcaaaatcaattccga
attgggatgatgcgtattgaaaaaaatgtaaaggaaaaaatttcaacaactaatcccttt
aaaatgaaaccatcaagcattattaacaataaaccgttaaccgcaataattggtgaattt
tttaatctttcacaactttcacaatttatggaccaaaccaacccactagctgaattaaca
aacaaaagacgtttaacagcactaggtcctgggggacttagccgtgaacgtgctggtctt
gaagttcgagacgttcacccaagtcactatggtagaatttgtccaattgaaactcccgag
ggaccaaacattggtttaattaataacttatcaacatatgctcgaattaatgaatatggt
ttcatcgaaactccttaccgcaaagttgaaaataaaaaagttgttcccgataagtacgaa
tacttgacagccgatcaagaacgtgacttcattgttgctcaagcaaacattaaaattgat
aaagatggaactattttggatgataatgttgttgcgcgttatcgtggagacgacattatg
gcaaatgcagaagatgttgactatgttgacgtttcaccaaaacaaattgtgtcaattgcc
acaagtttaattccgtttttagaaaatgatgatgccaaccgagcattgatgggtgccaat
atgcaacgtcaagctgtacctttaataaatcctcagtctccagttgttggaaccggagtt
gaatttgaagcagctcgtgattcgggtgatgctattgttgctcgcgaagatggtattgtt
aaatttttagattcaagaaaaattactttggaaaccaaagagggaccaaagcattatgtt
ttaagtgattttattcgctcaaataatggaactgcgattacccactctccaatcgtcaaa
ctaaatcaaaaagttaaaaaaggtgatattttagctgatggcccttcaatggaaaaaggt
gaattagctctagggcaaaatgttgttgtagcatttaccacttgaaatggttataactat
gaggatgccgttattgtttctgagcgaattgtaattgatgatcgatttacatcaattcac
atcgatgaatatacaattgaaaaacgccagacaaaacaaggtccagaagaaattactaga
gaaattccaaatatttcagaagctagcaaaaaatatcttgacgaaagcggaattattgca
attggttctgaggttaaagttggtgatattttggttggtaaagttactccaaaatcacaa
actcagttatcaccagaggataaattattacatgctatttttggggaaaaatcaagaaac
gttaaggataactcattaagagttcctaacggaggtgaaggaattgttcaatcaattcgt
cgtttttctcgagctgatggctatgatttaccagcagatattcttgaagtaattaaagtt
tttgttgttcaaaaacgtaaaattcaagaaggggataaaatggccggtcgccatggtaac
aaaggggttatttcaaaaattttaccagttgaagatatgccatacatggaagatggaact
ccggttgatattatgttgaatccacaaggggtaccttctcgtatgaatattggtcaagtt
ttagaaatccacttaggaatggctgcggaaaaacttggaattaaagtctcaaccccagtt
tttgaaggtttgaatgacgaagaacttcaagatattatggcagaagcgggaatgaaaaat
tatggtaaagttaccttaattgatggaagaaccggagaagcttttgataaaccgatcgct
gttggtgtaatgtatatgttaaaactttcacacatggttgatgataaattacatgcaaga
aatgtaggaccatattcattaataacacaacaaccattaggtggtaaagcccaaaatggg
ggacaacgatttggagaaatggaagtatgagctcttgaggcttatggtgctgcttatact
ctaagagaaatcctaacaattaaatcagatgatattcgcggaagaataaaaacttatgaa
gcgatcgttcgtagtaaagaaatcccaaatccaggaattccagaatcatttaatgtttta
acaaaagaaataatgggtcttggttttgatatgcatatgattgatgagtttggtaataaa
gttttaattaatgcatacgaagatgaaattctagatgatttcacagaatatgaaaaaaac
aataatcgaacaatttctcaagcttaa

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