Spiroplasma sabaudiense: SSABA_v1c01710
Help
Entry
SSABA_v1c01710 CDS
T03048
Symbol
deaD
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssab
Spiroplasma sabaudiense
Pathway
ssab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSABA_v1c01710 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssab03019
]
SSABA_v1c01710 (deaD)
03009 Ribosome biogenesis [BR:
ssab03009
]
SSABA_v1c01710 (deaD)
Enzymes [BR:
ssab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SSABA_v1c01710 (deaD)
Messenger RNA biogenesis [BR:
ssab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSABA_v1c01710 (deaD)
Ribosome biogenesis [BR:
ssab03009
]
Prokaryotic type
rRNA helicases
SSABA_v1c01710 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Helicase_C_2
IspD
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHI53583
UniProt:
W6A8V0
LinkDB
All DBs
Position
complement(202160..203578)
Genome browser
AA seq
472 aa
AA seq
DB search
MNFNEINLKPELQKALARHNLTVATEIQEKTIPLALENRDIIGKSQTGTGKTAAFLLPIL
ERLVPNVNFVQAIIVTPTRELALQVLDKVRDLSMYLEGISSAGVTGGANIARQIQSLKRA
NIVVGTPGRITDLLNRKALKLNQVRTVVLDEADEMLKMGFKQDINNLFASIPEEHQTLLF
SATMNKQVNEIANKYLKNPIEVSVERGALSGANIKQYFIDTKTHNKEDALLAIYSNIKPE
LSIVFANTKSQTEEISSLLYKNGVRSFVINGDKRQSERNRALKAFKTSATKVLVATDVAA
RGIDVPGIDYVINYDLPHDHEYYIHRIGRTARAGSSGNSISLVGNRNNFFHLKDLEKYQN
KEIEQMDVTSWELPIIERRSGGGNSGGFRRGSDNRSGGGRNFSDNRGSSGGSSRNFKPSS
DRPFTKSNDFGGGGSFENNGPSKDRRKRDFNTSKPKRSGYAGGKSKTKSNWS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaacgaaataaacttaaagcctgagcttcaaaaagctttggctcgccataat
ttaacagtggcaacggaaattcaagaaaaaacaattccgttggctcttgaaaatagagat
attattggaaagtctcaaacagggacagggaaaacagcagctttcttacttccaatttta
gaaagattagtaccaaatgtgaactttgttcaagcaattatagtaaccccaaccagagaa
cttgctttgcaagttctggacaaggttcgtgatttatcaatgtaccttgaaggaatatct
tctgcaggtgtaacagggggagctaatattgctcgccagatccagtcactaaaacgtgca
aacatcgttgttggaactccaggacgaattacagaccttttaaaccgtaaggcattaaaa
ctaaaccaagttagaacagtcgttttagacgaagctgatgaaatgctaaaaatgggattc
aaacaagatataaacaatctttttgctagtattcccgaagaacaccaaacattattgttt
tcagcaacaatgaataaacaagtaaatgaaattgctaataaatatctaaaaaacccaatt
gaagtatcagttgagcgtggagcacttagtggagcaaatattaaacaatactttattgat
acaaaaacccacaataaagaagatgctctattagcaatttattcaaatattaaacccgaa
ttgagcattgtttttgccaatactaaatcacaaactgaagaaattagcagtttgttatat
aaaaacggggttcgcagttttgttatcaatggtgacaaacgtcaaagtgaacgtaaccgt
gctttaaaagcttttaaaacatcagctactaaagttttagttgcaacagacgttgcagct
cgaggaattgatgttccaggaatcgattatgtaattaactacgacttgccccatgatcac
gaatactacattcaccgaattggaagaacagctcgtgcaggatcaagtggtaattcaatt
tcacttgttggaaaccgtaataacttctttcatttaaaagatttagaaaaataccaaaac
aaagaaatcgaacaaatggatgtaaccagctgagaactaccaattattgaacgtagatct
ggtggtggaaattctggtggctttagaagaggttctgataaccgctctgggggaggaaga
aacttttctgacaaccgcggttcttctgggggaagttcaagaaactttaaaccaagttca
gatcgaccatttacaaaaagcaacgattttggaggtggtggttcatttgaaaacaatggc
ccttcaaaagaccgtcgcaaacgcgattttaacactagcaaaccaaaacgttcaggttat
gctggtggcaaaagtaaaacaaaatcaaactgaagttaa
DBGET
integrated database retrieval system
