Staphylococcus saccharolyticus: I6I31_06670
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Entry
I6I31_06670 CDS
T07353
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssac
Staphylococcus saccharolyticus
Pathway
ssac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6I31_06670 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssac03019
]
I6I31_06670 (rnr)
03016 Transfer RNA biogenesis [BR:
ssac03016
]
I6I31_06670 (rnr)
Enzymes [BR:
ssac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6I31_06670 (rnr)
Messenger RNA biogenesis [BR:
ssac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6I31_06670 (rnr)
Transfer RNA biogenesis [BR:
ssac03016
]
Prokaryotic type
tRNA degradation factors
I6I31_06670 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
RNase_II_C_S1
OB_Dis3
RHH_9
Motif
Other DBs
NCBI-ProteinID:
QQB97765
LinkDB
All DBs
Position
1374332..1376719
Genome browser
AA seq
795 aa
AA seq
DB search
MILKQSIEEMIKQPDYEPMSVSDFQDALGLNSADSFRDLIKILVELEQSGLIERTRTDRY
QRKQSNKTNSKLIKGTLSQNKKGFAFLRPEDDEMEDIFIPPTKINRALDGDTVIVEIQKS
RGEHKSKIEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAVDG
HKVLVQITKYADSNDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDEVLKEAEEVP
DVIEPFEIKGRRDLRDDLTITIDGPDAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKED
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEVDRLTLSCRMEISARGEVINHE
IFDSVIHSNYRMTYDAVNKIITDQDPETRSQYKDLTPMLDLAQDLSNRLIQMRKRRGEID
FDINEAKVLVNDEGIPTEVLMRERGEGERLIESFMLAANETVAEYFNKLEVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQNIQEEVEGRPEQIVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIDHSMDKKELRHWEDTLPELA
EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGVISSVANFGMFVELPDTIEGMVHI
ANMTDDYYHFDERQMALIGERQAKVFRIGDEIKVKVTHVDVDERMIDFQIVGMPLPKNTQ
SQHPARGKTIQAKTRGKSLDNSKNDVNSKNSKGKKKKRKQRKGKNARKKDKQGNTHHKPF
YKSKSVIKKSRRKKK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgattttaaagcaatccatcgaagaaatgattaaacaacctgactatgaacccatgtca
gtatctgactttcaagatgcgttaggtttaaatagtgccgactcatttagagatttaatt
aaaatactcgttgaattagaacagtctggtttaattgaacgtacgagaacagacagatat
caacgtaaacaatctaacaaaacaaattcaaaactaatcaaaggaacgttaagtcaaaat
aaaaaaggctttgcttttttaagacctgaagatgacgagatggaggatatttttattcca
ccaactaaaatcaatagagcattagatggagataccgtcatcgtagaaattcaaaaatct
cgtggagaacataaaagtaaaattgaaggtgaagtaaaatctattgaaaagcattcagtt
acgcaagttgttggaacgtatagcgaagcaaagcattttggtttcgtattaccggatgac
aaacgtattatgcaagatatctttattcctaaagggcaaaacttaggcgcggtggatgga
cataaagtgcttgttcaaatcactaaatatgcggatagcaacgataatccagaaggacat
gtttcagcaatcttaggacataaaaatgatcctggcgtagatatactgtctattatttat
caacatgggatagaaatcgagtttcctgatgaagtgttaaaagaagctgaagaagtacca
gatgtgatagaaccatttgaaattaaaggtcgtcgagatttaagagatgacttgacgatt
acaatcgatggtccagatgctaaagatttagatgatgccatcgctgtaaaaaaattgaaa
aatggcaacaccgagcttacagtaagtattgccgacgtaagttattatgttaaagaagat
tcagctttagacaaagaagcgtacgaccgtgcgacaagtgtgtatctcgtggatagagtg
attccaatgattccacaccgtttaagtaatggaatatgttcattaaatcctgaagtggat
cgtctcacattaagttgtcgtatggaaatcagtgcgcgtggtgaagtaattaatcatgag
atttttgatagtgtgatacattctaactatagaatgacatacgacgcagttaacaaaatc
atcactgatcaagatcctgaaacgcgttcacaatacaaagatttaacacctatgttagat
ttagcgcaagatttatctaatagattgattcaaatgcgcaaacgtcgtggggaaattgat
tttgatattaatgaagcgaaagtacttgtgaatgacgaaggtattccaacagaagtgcta
atgagagaacgaggtgaaggggaacgcttaatcgaatcgttcatgttagcagccaacgaa
acagtagctgaatacttcaataaattagaagtaccatttatttatcgtgttcacgaacaa
ccaaaatctgaccgattaagacagttcttcgactttattaccaatttcggtattatgatt
aaaggtacaggtgaagatattcatccaacaaccttacaaaacattcaagaagaagtcgaa
ggtagaccggaacaaatagtcatttcaacgatgatgttgcgttcaatgcaacaagcacat
tatgatgatgttaatttagggcacttcggtttatctgctgagtactatactcactttaca
tctcctatacgtcgttatcctgacttaacagtgcatcgattgattcgcaaatatttaatt
gaccattctatggataaaaaggaattaagacattgggaagatacgctgccagaacttgct
gaacatacgtcacaacgggaacgtcgtgcgattgaagctgaacgtgatactgatgagttg
aaaaaagctgagtatatgattcaacatattggtgatgaatttgaaggtgtcattagttca
gttgctaatttcggtatgtttgtagaattacctgataccattgaaggtatggttcatatt
gcgaatatgacagatgattattatcattttgacgaacgtcaaatggcattgattggcgaa
cgtcaagctaaggtatttcgcattggtgatgaaataaaggtcaaagtgactcatgttgat
gtggatgaacgtatgattgacttccaaattgtaggtatgccgttacctaaaaatacgcaa
tcacaacatcctgctcgtggtaagacgattcaggctaagacacgcggtaagtcattagat
aattctaaaaatgatgttaatagtaaaaatagtaaaggtaagaagaaaaagcgcaagcaa
cgtaaaggtaaaaacgcgcgcaaaaaagataaacaaggtaatacgcatcataaaccattt
tacaagagtaaaagcgtgatcaagaaatcacgtcgcaagaaaaaatag
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