Sphingomonas sanguinis: KV697_05395
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Entry
KV697_05395 CDS
T09609
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssag
Sphingomonas sanguinis
Pathway
ssag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV697_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssag03019
]
KV697_05395
03009 Ribosome biogenesis [BR:
ssag03009
]
KV697_05395
Enzymes [BR:
ssag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KV697_05395
Messenger RNA biogenesis [BR:
ssag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KV697_05395
Ribosome biogenesis [BR:
ssag03009
]
Prokaryotic type
rRNA helicases
KV697_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXT36742
LinkDB
All DBs
Position
complement(1223010..1224752)
Genome browser
AA seq
580 aa
AA seq
DB search
MPFSALPPVLSAALSARGYTAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASE
LLNGGDHLPQPGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL
SHGTHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDGTPSERR
TLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQAVTVAPADIEAAVVNLLRL
HEAEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLR
GARIDAEWRRAPTLEEIRAQDRERLLAALLAPVEVDEGDRELATRLLAEKSPEDIAAALV
RAHRAALPQAEELVEGDAPAPRERREGFDDTAWFRMSVGRSQNADPRWLLPLICRRGHIT
RNEIGAIRIQPNETLFEIPSALASRFIAALKRTEADHAEDDIAIEQADGPPAGGSGHGGG
PRRGPGGNRPMGGRPAGGPGGPRRYAPRPTQGGPRGPRRG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttctgccttgccgccggtattgtcggctgccctttccgcgcgtggctatacc
gcgccgaccccggtccaagccgccgtcatcgaggatgacgcccagggtcgcgacctgatc
gtgtccgcccagaccggttcgggcaagaccgtcgccttcggcctcgccatggcgagcgag
ttgctgaacggcggcgatcacctgccccagccgggcgcgccgatggcgctggtcatcgcg
ccgacgcgcgagctggcgctgcaggtcagccgcgagctggaatggctttatgccggtgcc
cgcgcgcgcatcgcaacctgcgtcggcggcatggacgcctcgcgcgaacgtcgcgcgctc
agccatggcacccacatcgtcgtcggcacgccgggccgtctacgtgaccatctggagcgc
ggtgcgctcgacctgtcgtcgctgaagttcgtcgtcctcgacgaggcggacgagatgctc
gacatgggcttccgcgaagatttggagcagatcctcgacggcacgccgtccgagcgccgc
acgctgctcttctcggcgaccatgccgcgcccgatcgtgcagctcgccaagcgctaccag
accaatgccaagcggatcgagacgatcagcgaggacaagggccatgccgacatcgcctat
caggcggtaacggtcgcccccgccgatatcgaggcggcggtggtcaacctgctgcgcctg
cacgaggccgaggtcgcgatcctgttctgcgccacgcgcgacaatgtccgccatctgcac
gccagcctggtcgagcgcggtttctcggcggtggcgctgtcgggcgagcattcgcagaac
gagcgcaaccatgcgctgcaggcgctgcgtgatgggcgcgcccgcgtctgcgtcgcgacc
gacgtcgcggcgcgcggtatcgacctgcccggcctgactttggtcatccacgtcgaaatc
cctcgcgatgccgaggcgttgcagcaccgttcgggtcgcaccggccgcgccggtcgcaag
ggcaccgcgatcctgatcgtgccgtacccgcgccgtcgccgggtcgaggggatgctgcgc
ggcgcccgcatcgatgccgagtggcgtcgtgcgccgacgctggaggaaatccgcgcgcag
gaccgcgagcgtctgcttgccgcgctgctcgcgccggtcgaagtggacgagggtgatcgc
gaactggcgacccgcctgctcgccgaaaagtcgcccgaggacatcgccgccgcgctggtc
cgcgcgcatcgcgcagcacttccccaggccgaggaactggtcgagggtgacgccccggcc
ccgcgcgagcgtcgcgaagggttcgacgacaccgcctggttccgcatgagcgtcggccgc
agccagaatgccgatccgcgctggctgctgccgctgatctgccgtcgcgggcacatcacc
cgcaacgagatcggcgcgatccgcatccagcccaacgagacgctgttcgagatcccgtcc
gcgctggcatcgcgcttcatcgccgcgctgaagcggaccgaggcggaccatgccgaggac
gatatcgcgatcgagcaggccgatggcccgcccgccggtgggtcgggtcatggcggcggt
ccgcgtcgtggtccgggcggcaaccgtccgatgggcggtcgtccggccggtggccccggc
ggcccgcgccgctacgcgccgcgtcccacccagggcggcccgcgcggtccgcgtcgcggc
taa
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