Streptococcus salivarius HSISS4: HSISS4_01769
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Entry
HSISS4_01769 CDS
T04634
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssah
Streptococcus salivarius HSISS4
Pathway
ssah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HSISS4_01769 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssah03021
]
HSISS4_01769 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssah03400
]
HSISS4_01769 (rpoC)
Enzymes [BR:
ssah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HSISS4_01769 (rpoC)
Transcription machinery [BR:
ssah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HSISS4_01769 (rpoC)
DNA repair and recombination proteins [BR:
ssah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HSISS4_01769 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
ALR80781
UniProt:
A0A0A1DZS8
LinkDB
All DBs
Position
complement(1966414..1970052)
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPTKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKETPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLL
KQVDLEAEIAELKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVLPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
LMAIELFKPFVMREIVAREYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLLLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFKDIDEAVMAYRNGYVHLHSRVGI
AVDSMPDKPWKENQLHKILVTTVGKILFNSIIPAEIPYLQETTNENLTDSTPDKYFLEPG
QDIQTVIDSLEINAPFKKKNLGNIIAETFKRLRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTKKSVKNPTTGEVIVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCNTRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVVPFTARMKVEVGDE
VHRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGVPATSRPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKTIPAGTGMARYRNIEPLSVNEVEVIENI
AVDEAIVESSED
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacactagcttcaccaactaaggtc
cgttcatggtcttatggtgaagttaagaaacctgaaacaatcaactaccgtacgctcaaa
ccagaacgcgaaggtctcttcgacgaagtgatctttggtcctactaaagactgggaatgt
gcgtgtggaaaatacaaacgtatccgttataaaggtatcgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaggttcgtcgtgaacgtatgggtcacatcgagttgaaagcacca
gtatcacacatctggtacttcaagggaatcccttctcgtatgggattgactttggatatg
agtcctcgtgcgcttgaagaagttatctacttcgcagcttacgtggttatcgatccaaag
gaaacaccacttgaaccaaaatctctcttgacagaacgtgaatatcgtgaaaaattgcaa
gagtatggacatggttcatttgtcgctaaaatgggtgcagaagctatccaagatctcttg
aaacaagtggatttggaagctgaaattgctgaactcaaagaagagttgaagacagcaact
ggtcaaaaacgtgttaaagctgttcgtcgtttggacgttcttgatgccttctataagtct
ggtaacaaaccagaatggatggttcttaacatcttgccagtattgccaccagaccttcgt
ccaatggttcaattggatggtggacgttttgcggcatctgacttgaacgatctttatcgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgccccaggtatc
atcgtgcaaaacgaaaaacgtatgttgcaagaagcggtagatgcccttatcgataatgga
cgtcgtggtcgtccaatcactggaccaggtagtcgtccacttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgccaaaacttgcttggtaaacgtgttgacttctct
ggacgttccgttatcgccgttggtccaacacttaaaatgtaccaatgtggtgtgccacgt
ttgatggccatcgaacttttcaaaccatttgtgatgcgtgaaatcgttgcgcgtgaatac
gcaggtaacgtgaaagccgctaaacgtatggttgaacgtggtgacgaacgtatttgggat
attcttgaagatgttatcaaggaacacccagtacttcttaaccgcgcacctaccctccac
cgtttgggtatccaggccttcgaacctgtcttgattgatggtaaggcccttcgtcttcac
ccattggtatgtgaggcctacaatgccgactttgacggtgaccaaatggccatccacgtt
ccattgtctgaagaagctcaagctgaagcacgtttgctccttcttgcggctgaacacatc
cttaaccctaaagacggtaaaccggtcgtaacaccatctcaggatatggttcttggtaac
tactacttgactatggaagaagaaggccgtgagggtgaaggtatggtcttcaaggatatt
gatgaggcagttatggcttatcgtaatggttatgttcacttgcatagccgtgtcggtatc
gcagtagacagcatgcctgataaaccttggaaagaaaaccaacttcacaagattttggtt
acaactgttggtaagattctctttaactcaatcattccagcagaaattccatatcttcaa
gaaacaacaaatgagaacttgacagatagtacaccagataagtacttccttgaaccaggt
caagatatccaaacagttattgatagtttggaaattaatgcgccattcaagaagaaaaat
cttggtaacatcatcgctgaaaccttcaaacgtcttcgtacgactgaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccactcaacacttgctggtttgacagtgggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgctgctcaccatcgt
gttgaagaaattaacaaggccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gctgttacaacaacatggcgtgaagcgaaagaagcacttgaaaaacgtctgattgagaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctctcaacttgccggtatgcgtggtttgatggccgcgcctaacggacgtatcatg
gaattgcctatcctttcaaacttccgtgaaggtttgagcgttttggaaatgttcttctct
actcacggtgcgcgtaaaggtatgaccgatacggcccttaagacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcatccgtgaagatgactgtgga
acagaccgtggtcttctcatccgtgcgattactgacggtaaagaagttacggaaacactt
gaagaacgtcttcaaggtcgttacactaagaaatcagttaagaatcctacaacaggtgaa
gtaatcgtaggtccagatactttgattactgaagacatggctgctgctattgtcaatgct
ggtgttgaagaagtaactatccgttcagtctttacatgtaacacacgtcacggtgtctgc
cgtcactgttacggtatcaacttggcaacaggtgatgcggttgaagttggtgaagcagtt
ggtactatcgccgctcaatctatcggggaacctggtacacagcttactatgcgtaccttc
cacaccggtggggtagcctcaaacaccgatatcacacagggtcttccacgtatccaggaa
atctttgaagcacgtaaccctaaaggggaagcggttatcactgaagttaaaggtactgtt
attgaaatcgaagaagatgccgcaacacgtactaagaaagtcttcgttcaaggtaagact
ggaatgggtgaatacgttgttccatttacagctcgtatgaaagttgaagtgggtgacgaa
gtacaccgtggtgcagccttgacagaagggtcaatccaacctaaacgtctccttgaagtg
cgtgataccttgtcagttgaaacttatcttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggtgacaaacacgtcgaagtaatggttcgtcaaatgcttcgtaaa
gtacgtgttatggatccaggtgatacagatctccttccaggtacacttatggacatttct
gacttcacagatgctaacaaggatattgttatctctggtggtgttcctgcaacatctcgt
ccagttcttcttggtattacgaaagcctcacttgaaacaaattcattcttgtcagcggct
tccttccaagaaacaacacgtgtgcttacagatgcagctatccgtggtaagaaagaccat
ctccttggtcttaaagaaaatgttatcattggtaagactattcctgctggtacaggtatg
gctcgttaccgtaacattgaaccactttcagttaacgaagttgaagttattgaaaatatt
gctgttgatgaagcaattgtggaatcatctgaagactaa
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integrated database retrieval system
