Spiribacter salinus: SPISAL_02445
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Entry
SPISAL_02445 CDS
T02685
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPISAL_02445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_02445
Enzymes [BR:
ssal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPISAL_02445
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPISAL_02445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGM40584
UniProt:
R4V3K2
LinkDB
All DBs
Position
complement(497826..499100)
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AA seq
424 aa
AA seq
DB search
MEQNHLSDTRFESLNLHESLLTGLKEAGFEHCTPIQAEALPIALKGGDVAGQAKTGTGKS
AAFLLACMHRLMTTPVAEDKTGPWAIILAPTRELALQIHKDAERLGWFTGMDFACIYGGT
GYESQRKALERGTDILIGTPGRIIDFYKQGVFSLDNIEVCILDEADRMFDMGFIADIRYL
LRRMPPPEKRLNMLFSATLSERVRELAYEHMNEPESIKIESETITADRVRQTLYHVENTE
KIGLLLGVLQQQDPTRTLIFVNTKRDADRVTGYLMGNDIKAAVISGDIPQNKREQLLGKF
QSGDLPILVATDVAARGLHIPEVSHVINYDLPQDAEDYVHRIGRTARAGAAGEAISFACE
SYVYSLPDIEKYIDQKIPSEMAPPDLIATDIKAPARMDNRRSTGGNRRGSGGGNNRRPSS
SSQS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaatcatctctccgacacccgctttgaatccctcaacctgcacgagtcgctg
ctgaccggcctgaaagaggccggcttcgagcactgcacgccgattcaggccgaagcccta
cccatcgcgctaaaaggcggcgatgtggccggccaggcaaagaccggcacaggcaaatcg
gccgccttcctgctggcctgcatgcatcggctgatgaccacgccggtcgccgaggataaa
accgggccctgggcgatcatcctcgctcccacccgggagctcgcactgcagatccacaag
gacgcggagcgcctcggctggttcaccggcatggatttcgcctgcatctatggcggcacc
ggctatgaaagtcagcgcaaggccctcgagcgtggcacggatatcctcatcggcacgccc
gggcggattatcgatttctacaagcaaggcgtcttcagcctcgacaacatcgaggtctgc
attcttgatgaggcagaccgaatgttcgacatgggctttatcgccgatatccgctatctg
ctgcgccgcatgccgccgccagagaagcggttgaacatgctcttctcggccacgctatcg
gaacgggtccgcgagctcgcctacgagcacatgaacgagcccgaatccatcaagatcgag
tcggaaaccatcaccgccgaccgtgtgcgccagacgctctatcatgtggagaacaccgag
aaaatcggcctcctgctcggtgttctacaacagcaggatcccacccgaaccctgattttc
gtcaataccaaacgcgatgcagatcgcgtcaccggctatctgatgggcaatgacatcaag
gcagccgtcatctcgggcgatatcccacagaacaaacgcgagcaattgctcggcaagttc
cagtccggtgatctgcccatcctggtcgcgaccgatgtcgccgcacgggggctgcacatt
ccggaagtcagccatgtcattaactatgacctgccccaggatgcggaggattacgtccat
cgcattggccgcacagcccgggccggagcggccggagaagcgatcagcttcgcctgcgag
agctacgtctactcgttgccggacatcgagaagtacattgaccagaaaataccctcggag
atggcgccaccggacctgatcgccactgacatcaaagccccggcacggatggacaatcgc
cgcagcacgggggggaatcggcgcggcagcgggggcggaaacaaccgacgcccgagttcg
tccagtcagtcgtag
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