Spiribacter salinus: SPISAL_02825
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Entry
SPISAL_02825 CDS
T02685
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPISAL_02825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_02825
Enzymes [BR:
ssal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPISAL_02825
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPISAL_02825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
UvrD-helicase
AAA_11
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGM40659
UniProt:
R4V3T1
LinkDB
All DBs
Position
complement(568603..569727)
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AA seq
374 aa
AA seq
DB search
MTFADFGLRAELLEAVQASGYTTPTPIQDQAIPAILNGDDLLAAAQTGTGKTAAFTLPLL
HRLAASEPAAKRRPVRLLVIAPTRELAAQIHESVKSYGGSLPLRSGVIFGGVGMQPQIDR
LRKGVDVLIATPGRLLDHLQRGNARLDGVETVVLDEADRMLDMGFIHDIRKILKMLPAKR
QTLLFSATFSAEIRRLASGMLTQPTEIDVAPRNSAAETVAQRVYRLEKAEKRRVLSRLIR
DGDWQQVLVFTRTKHGANNLSRQLDQDGLSAEAIHGNKSQAARTRALDGFKRGKVRVLVA
TDIAARGLDIDHLPHVVNYDLPHVAEDYVHRIGRTGRAGNAGEAISLVAPDEARLLKGIE
RLLKRPLERADANA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctgatttcggcctgcgcgccgagctgctcgaggccgtacaggcgtcgggc
tacaccaccccgacccccatacaagaccaggcaattcccgccatattgaacggcgatgac
ctgctcgctgcagcccagaccggaaccggcaagaccgctgcattcaccctgcccctgctg
catcgactggcagcctccgaaccggctgccaagcgccgcccggtccggctactcgtgatt
gcgccgacccgagagctggccgcgcagatccatgagagcgtcaaatcctatggcggcagc
ctcccgctgcgatccggcgttatctttggcggcgtcggcatgcagccccagatcgaccgg
ttacgcaagggcgttgatgtcctgatcgcgaccccgggtcggctactggaccatctccag
cgcggcaacgcgcggttggatggcgtggaaacggttgtattggatgaagcggatcgcatg
ctggacatgggattcattcacgacatccgcaagatcctgaagatgctgcccgccaaacgg
cagacgctgctgttttcagcgaccttctctgcggaaattcgccggcttgcctcgggcatg
ctcacccagcccaccgagatcgacgtcgcacctcgcaacagtgccgctgaaacggttgct
cagcgcgtctaccggcttgaaaaggccgaaaagcgccgcgttctcagccgtctgatccgg
gatggcgactggcagcaggttctcgtgttcacgcgaaccaaacacggcgccaacaacctg
agccggcaactcgatcaggatggcctcagcgctgaggccattcatggtaacaagagccag
gcagcccgcactcgggcactggacgggtttaaacgcggcaaggtccgagtgctggtcgcc
accgatatcgcggcccgtggcctcgatatcgaccacctgccccatgtggtcaactacgac
ctgccccatgttgccgaggactatgtccaccgcattggccgcaccggccgggcgggcaat
gcgggtgaggccatttccctggtcgctccggatgaggccaggctgctgaaaggcatcgag
cggctgttgaaacggccgctcgagcgcgctgacgcaaacgcctaa
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