Spiribacter salinus: SPISAL_03200
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Entry
SPISAL_03200 CDS
T02685
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPISAL_03200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_03200
03016 Transfer RNA biogenesis [BR:
ssal03016
]
SPISAL_03200
Enzymes [BR:
ssal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPISAL_03200
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPISAL_03200
Transfer RNA biogenesis [BR:
ssal03016
]
Prokaryotic type
tRNA degradation factors
SPISAL_03200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AGM40734
UniProt:
R4V475
LinkDB
All DBs
Position
650632..652746
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AA seq
704 aa
AA seq
DB search
MTPTAVKKSFQFGEQTVTLETGKIARQATGAVLVNMADTVVLVTVVGKREEVPGRSFLPL
TVNYQERTYAAGKIPGGFFKREGRPSEKETLVCRLIDRPIRPLFPAGFSNEVQVVATVIS
LNPEVDPDIPAMIGTSAALAISGIPFDGPIGAARVGYHNGDFLLNPTLSQLEESQLDLVV
AGTNDAVLMVESEADRLPEQTMLDAVLYGHEQMQTAITAINELAAETGKPRWDWVAPAAD
ETLAERVRAHAEAPLTEAYGVADKQARQEAIAQVRAQVNEALVATEEGGEGWSADGVGEA
FKGLEKKIVRGRILAGEPRIDGRDQHTVRPIDIEVGTLPRTHGSAIFTRGETQAIVVTTL
GTGRDAQVIDAIEGERREPFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMP
APEDCPYVVRVVSEITESNGSSSMASVCGTSLSLMDAGIPIKAPVAGIAMGLIKEGDDFA
VLTDILGDEDHLGDMDFKVAGSENGVTALQMDIKINGITREIMEQALGQARDGRLHILGR
MNEVIGEHREEMSAYAPRLITLRIDPEKIRDVIGKGGATIRQLTEETGTTIDITDDGTVT
IGSVDKAAGEEARRRIELLTADVEVGQVYEGKVNKLMDFGAFVNILPGRDGLVHISQISH
RRVESVGDELSEGQSVQVKVLEVDRQGRIRLSIKALEEEEGVES
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgactccaaccgccgtcaagaaatctttccagttcggtgagcagaccgtcacgctggaa
actgggaaaatcgcgcgccaggcaaccggcgctgtcctcgtcaatatggccgataccgtg
gtgctcgtcaccgtggtgggcaaacgcgaagaggtgccaggccgcagcttcctgcccttg
acggtgaactaccaggagcgcacctacgcggccggtaagattcccggcggttttttcaag
cgcgagggacggccttccgagaaagagacgctggtctgtcggttgattgaccggccgatt
cgtccgctcttcccagccggtttctccaacgaggtgcaggtggtcgcgacagtgatctcg
ctgaatccggaggtcgatccggatatccccgccatgatcggcacttcggctgcgcttgcc
atctcgggtattccttttgacggcccgatcggtgcggcccgcgtgggctatcacaatggg
gatttcctgctgaaccccacgctaagccaacttgaagaatcccagctggatctggtggtt
gcgggcacgaatgatgccgtcctgatggtggagtcggaggcagaccgtctgcctgagcag
accatgctggatgccgttctctacggccatgagcagatgcagacggcgattaccgcgatc
aacgaactcgctgccgagacaggtaagccgcgctgggattgggttgcgccggctgccgat
gaaacactcgcagagcgtgtacgcgcacatgctgaggccccgctgaccgaggcctacggt
gtggccgataagcaggcgcgtcaggaagcgattgcccaggtccgcgcccaagtcaacgaa
gcgctggtcgcgaccgaagagggtggcgaaggctggtcggctgatggggtgggtgaggcc
ttcaagggcctggagaaaaagattgttcgcggtcgtattctggccggggagccccgaatc
gacggacgtgatcagcacacggtgcgaccgatcgatatcgaagtgggcacgctgccacgg
acgcatggctcggccatctttacccgtggtgagacccaggccattgtggtgaccacgctg
ggcaccggccgtgacgcgcaggtcatcgacgccatcgagggcgagcgtcgcgagcccttc
atgctgcactacaacttcccgccgtactgtgtgggtgagactgggttcatggggacgccc
aagcgccgtgagatcggccatggcaagctcgccaagcgcggtatcgaagcggtcatgcct
gccccggaggactgtccttatgtcgtccgcgtggtctcggagatcaccgagtccaatggt
tcaagctctatggcctcggtgtgtggcaccagtctctcgctcatggatgcgggtattccg
atcaaggcgcctgttgcgggtatcgccatgggtctgatcaaggaaggcgatgactttgcc
gtattaacggatatcctgggcgacgaggaccacctcggcgatatggacttcaaagtggct
ggctcggagaacggcgtcactgctttgcagatggatatcaagattaacggcatcacccgc
gaaatcatggaacaggccctgggccaggcccgtgacggtcgcctgcatatcctgggccgg
atgaacgaggtgattggtgagcatcgcgaagagatgtcggcctacgcgccgcgcctgatc
accctgcgcatcgacccggagaagatccgtgacgtcattggcaagggcggcgcgacgatt
cgccagctcaccgaggaaacgggtacgacgatcgacatcactgacgacggtacggtcacc
attggttcagtggataaggcagcgggtgaggaggcccggcgccgcatcgaactgctgacc
gctgacgtcgaggtcggccaggtctacgaaggcaaggtcaacaagctcatggacttcgga
gcgtttgtgaacatcctgcctgggcgtgatggcctcgttcacatctcgcagatctcccat
cgccgtgtcgaaagcgttggcgacgagctaagcgaggggcagagcgttcaggtgaaggtg
cttgaggtggatcggcagggccggattcgcctgagtattaaagcgcttgaagaagaagag
ggcgtcgagagctaa
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