Spiribacter salinus: SPISAL_03205
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Entry
SPISAL_03205 CDS
T02685
Name
(GenBank) putative PAS/PAC sensor protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03030
DNA replication
ssal03430
Mismatch repair
ssal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPISAL_03205
03430 Mismatch repair
SPISAL_03205
03440 Homologous recombination
SPISAL_03205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssal03032
]
SPISAL_03205
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_03205
Enzymes [BR:
ssal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPISAL_03205
DNA replication proteins [BR:
ssal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPISAL_03205
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPISAL_03205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS
PAS_4
PAS_9
PAS_7
HisKA
RNase_H_2
PAS_8
PAS_10
DUF4055
CENPH
KASH_CCD
WHD_GPIID
HAUS1
Apolipoprotein
Motif
Other DBs
NCBI-ProteinID:
AGM40735
UniProt:
R4V6X0
LinkDB
All DBs
Position
complement(652743..654755)
Genome browser
AA seq
670 aa
AA seq
DB search
MAGLATMNRAQGSSAGGALITAWLISLAGLLVTGIIIDRRLARPLVATARGADILASSNP
QHHLEISGRHWLDRLPDTLEQLGSALVRNQQDMDEAAQAVATKVEARRTRLETILREIRD
GVMVCDREGRIQLYNRTTRDLLSSEPALGLGRNISEVLNEGPLNHTLRLLVPTNENAAPA
DAELVCATASGERLLRCRVARLVTDDPETSGFVMTLQDVSRQTRETLRREQALRDAVESL
RNPLTSLNAATESLRLAQEEGLHEQTEQFARIIAEENEKLTHRFTTLSDETASVVTDNWR
LEDVHLGSLIEGIKVSVAAEVIPRLQCRADVWLSAEPYLLSRVIEALLARLREELGVTAL
ALSGREEGSLVYVDLNWSGDVIAADQLDHWLDAGLEDVGGTVSLREVLQRHDTTAWSQPD
LSKEGRAMLRLPLPGAPKKATVVETVPARPEYYDFAIEDADRPLGDTADASLETLDYVVF
DCETTGLEPSRGDEIVSIGAVRIHRGQVMHGETFELLANPGRPIPALASSIHGIYDEDVM
EAPPVEEVIRRFHAFAGNAVLVGFNTAFDLRFLKLKQRVTGVRFDNPTLDALLLSIMLHD
HTGEHTMESIAERLGVGVGGRHTALGDSLTTAEIFMRLIDLLPGESIRTLSEAITAQERM
IEFRRQQRAF
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctggccaccatgaaccgggcgcagggttcatcggcaggcggcgcactcatc
acagcctggctcatcagcctggcgggactgcttgtgacgggcataattatcgatcgccgc
ctggctcgaccactggtcgctacagcgcgcggcgccgatattcttgcaagctccaacccc
cagcatcacctcgagattagcggccggcactggcttgaccgcctgcccgataccctcgag
caactcgggagcgcgctggtcagaaaccagcaggacatggacgaagcggctcaggcagtg
gccaccaaagtcgaggcccgccggacccgacttgagaccattctccgggagatccgggac
ggggtgatggtgtgtgaccgggaggggcggattcagctgtacaaccggaccacccgcgat
ctcctgtccagcgagcccgcactggggcttggccgcaatatcagcgaggtgctcaacgag
ggaccgttgaatcacaccctccgtctccttgtccccacgaacgaaaacgccgcaccggcg
gatgccgaactggtctgcgccacggcgagtggggagcggctattgcgctgccgggttgca
cgcctggtcaccgatgatcccgagacctccggttttgtgatgacgctgcaagacgtctcg
cggcaaacacgcgaaacactgcgccgagagcaggcactacgcgacgcggtggaaagcctc
cgcaatcccctcaccagcctcaatgccgccacggaaagcctgcggcttgcacaagaggag
ggtctgcatgagcaaacagagcaattcgcccgtatcatcgctgaagagaacgaaaagtta
acccaccgcttcacgacactctctgatgaaaccgcttccgtggtgactgacaactggcgt
ctggaagacgtccatctgggcagtctcatcgagggcatcaaagtcagcgttgcagcggag
gtgatcccgcgcttgcagtgccgagctgatgtctggctatcagccgagccctacctgctt
tctcgggtcattgaggccctgcttgcacggctgagagaagagctcggggtcacagcgctg
gccctgagtggccgggaagaaggcagcctggtctacgttgacctgaactggtcaggggat
gtcattgcggcagatcagctggatcactggctggacgctggcctggaggatgtcggtggc
accgtgagcctgcgagaagtgctgcagcgacatgacacgactgcctggagccaaccggat
ctctccaaagaaggccgggcgatgcttcggctacccctgcccggcgcgcccaagaaggca
accgtggtcgagacggtgccggcgcggccagagtattacgacttcgcaatcgaagacgcc
gacagaccgctcggtgatacagcggatgcatcactcgagaccctggactatgtggtattc
gattgtgagaccacgggactggagccaagccgaggcgatgaaattgtctcgattggcgcg
gtccgtattcatcgcggccaggtcatgcatggtgagacgttcgaactgctcgccaatccc
gggcgcccgatccccgcgctcgcgagcagtatccatggcatttacgatgaggatgtaatg
gaagcaccgccggtcgaggaggtgatccgccggtttcacgcatttgccggcaacgccgtg
ctggtcggctttaacacggctttcgacttgcggttcctcaagctcaagcaacgcgtcacc
ggggtccggttcgataacccgacgctagacgccttgctattgtcgataatgctgcacgat
cacaccggtgagcacaccatggagagcattgccgagcgactgggggtaggcgttggtggc
cggcatacagccctcggcgattctctgaccaccgccgagatcttcatgcgactgattgac
ctgctaccgggcgagtccattcgcaccctgagtgaggcgatcacggctcaagagcgcatg
atcgaattccgtcggcagcagcgcgccttttag
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