Spiribacter salinus: SPISAL_03470
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Entry
SPISAL_03470 CDS
T02685
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ssal
Spiribacter salinus
Pathway
ssal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPISAL_03470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_03470
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPISAL_03470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPISAL_03470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
DUF87
AAA_30
Kinesin
P-loop_SecA
UB2H
AAA_22
HEM4
Microtub_bd
TrwB_AAD_bind
DUF3072
AIP3
DUF1104
Motif
Other DBs
NCBI-ProteinID:
AGM40788
UniProt:
R4VMJ6
LinkDB
All DBs
Position
711131..713164
Genome browser
AA seq
677 aa
AA seq
DB search
MTDETRHFRLESEFEPAGDQPTAIASLADSLRARGDHQTLLGVTGSGKTFTMASLIAQEQ
RPAVILAPNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE
HIEQMRLSATKAILERRDTIIVASVSSIYGLGDPSAYLKMVLHLTQGEQVDQRRILRRLA
QLQYARNDHDFSRGTYRARGDVIDIFPAESEDEAVRVELFDDEVESLAWFDPLTGEVLRR
VPRLTIYPKSHYVTPRETVLEAVEKIKVELKERLDELQKAGRLLEAQRLEQRTQFDLEMM
KELGYCNGIENYSRYLSGRGPGEPPPCLFDYVPEDAILFIDESHVTVSQVGGMYRGDRAR
KETLVEYGFRLPSALDNRPLKFEEFDDIAPQRIYVSATPGPYEQKHSTVVAEQVVRPTGL
VDPAVEVRPAGTQVDDVLGEIRERSDAGERVLVTTLTKRMSEDLTEYLSENGVRVRYLHS
DIDTVERTEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQT
IGRAARNVNGRAILYADVITDSMRRAMDETERRREKQVAHNTEHGITPQGIRKAIADVME
RGGASAPDTAEHYAEVAEEAKAYADLTTAQAVKRIKELEQKMHQHARNLEFEEAGKLRDE
IKRLQRHALGEPARNTA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaaacacgccatttcaggctcgaaagcgagttcgaaccggctggagatcag
ccgaccgccattgcctcgctggctgacagtttgcgcgctcgcggcgatcatcagacgttg
ctcggtgtcaccggctcgggcaagactttcacgatggcgagcctgatcgcccaggagcag
cgccccgccgtcattctggcgccgaacaagacgctggccgcgcagctgtatggcgagatg
aaggcgttcttcccggacaatgccgtggagtatttcgtctcctattacgattactatcag
cccgaggcctatgtgccgtcctcggacaccttcattgaaaaagacgcctcggtgaacgag
cacatcgagcagatgcgcctgtcggccaccaaggccatcctggagcgccgtgacaccatc
atcgtggcctcggtgtcctcgatttacggtctcggtgacccgagcgcttacctcaagatg
gtcctgcatcttacccagggcgagcaggtggatcagcgccgcatcctgcgccgcctcgcc
caactccagtacgcccgtaacgaccatgacttctcccgcggcacttaccgcgcccggggc
gatgtgatcgacatcttcccggcggagtccgaggacgaggcggtgcgcgtcgagctcttc
gatgacgaggtggagagcctcgcctggttcgacccgctcaccggcgaggtgctgcggcgg
gtgccacggcttacgatctacccgaaatcccattacgtaaccccgcgggagacggtcctg
gaggccgtggagaagatcaaggttgagctcaaggagcggctcgacgagctgcagaaggcc
ggccgactcctcgaagcacagcgcttggagcagcgcacccagttcgatctcgagatgatg
aaggagcttggctactgcaacggcatcgagaactactcgcggtatctgtccgggcgtggc
ccgggagagccgccaccgtgcctgttcgactacgtgcctgaggatgccattctttttatc
gacgaatcccacgtcaccgtcagtcaggtgggcgggatgtatcgcggtgaccgcgcgcga
aaggagaccctggtcgaatacggctttcgcctgccctcagcgctcgacaatcggccgctc
aagttcgaggaatttgatgacatcgcgccgcagcggatttacgtgtccgccaccccgggg
ccttacgaacagaaacactccactgtcgtcgctgagcaggtggtgcggccgaccgggctc
gtggaccccgctgtcgaggtgcgcccggcgggcacgcaggtggatgacgtgctcggtgag
atccgcgagcgcagcgatgccggcgagcgggttctggtcaccacgctcaccaagcggatg
tcggaggatttgacggagtatctttccgagaatggggtgcgggtgcgctacctccactcg
gatatcgataccgtcgagcgcacggagatcattcgtgacctgcgcctgggcgaatttgac
gtgctggtggggattaacctgttgcgcgaggggctcgatatccccgaagtctcactggtc
gcgatactggatgccgacaaggagggcttcctgcgcgcggagcgctcgcttatccagacc
atcgggcgtgcggcgcgcaacgtcaatggccgggcaatcctctatgccgacgtgatcacc
gactccatgcgccgggcgatggatgaaaccgagcggcgtcgggaaaagcaggtcgcgcac
aataccgaacatggcatcacgcctcagggtattcgcaaggccattgccgatgtcatggag
cggggcggcgcgagtgcgccagataccgccgagcactatgccgaggtcgccgaggaggca
aaggcctacgccgatctgaccacggctcaagcggtcaagcggatcaaggaactcgagcag
aaaatgcaccagcatgcccgcaacctcgagttcgaggaggcaggcaagctgcgtgatgag
atcaagcgcctacagcggcatgccttgggcgagcccgcgcggaatacagcctag
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