Spiribacter salinus: SPISAL_04130
Help
Entry
SPISAL_04130 CDS
T02685
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPISAL_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_04130
03009 Ribosome biogenesis [BR:
ssal03009
]
SPISAL_04130
Enzymes [BR:
ssal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPISAL_04130
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPISAL_04130
Ribosome biogenesis [BR:
ssal03009
]
Prokaryotic type
rRNA processing factors
SPISAL_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AGM40920
UniProt:
R4V7D0
LinkDB
All DBs
Position
844527..847091
Genome browser
AA seq
854 aa
AA seq
DB search
MLVNATQPEELRVALVDGQILYDLDIETPARERKKSNIYKGRITRVEPSLEAAFVQYGAE
RHGFLPFKEISREYFSGSDDTDPAKVSIADVIKEGQEVVVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGVSRRIEGDDRSEIRDALKEIEVPEGMGLIVRTAGVGRNAEELQW
DLDYLLNLWSAVKKAGETQAAPFLIYQESNVIIRALRDYLRADIGEILIDDREVYERARE
FVQQVMPHNLQKLKFYDDRVPLFSRYQIESQIESAFQREVRLPSGGLIVIDHTEALISID
INSARATKGADIEETALKTNVEAAEEIARQLRLRDLGGLIVIDFIDMGPNRNQRDVENRL
RDAVKQDRARVQVGRISRFGLLEMSRQRLRSSLGESSLEVCSRCSGQGTVRSVESLALSV
LRIIEEEAMKDKTGKVLAQLPVDVATFLLNEKRTILGALEARNGIEVILIPNRRLETPHY
ELQRLRTDEEEPADTSYRMAGEDVAPSKAEELLTAERPKAEEPLVKGVSPATPAPSRKAA
EPTTNISEPVKTAAQSSPSATTESAQAPGLLGWLKRIVVGSGEHADAETEPEAGSASATD
KSKDASTERQSNSSGRSSGGGRRRRSSSSSAGTSSGSRSNSSRSGSTRRSRPNGSEETAQ
EVTPAQPETEAEAPETADGSGTGSSSSTGTGRSRRGRRGGRRRRRGGANGQAPDTTEASE
ATQSDADAKVEAAAETAAEPAPQAAEKPEAAEETPVSSEDKPKPRRRSRSSTTRKKSEAA
DQPATPEAAPSTNEAKSTEPEADAPEADASKAKAAPKARAKPKPKPKAKPKPKEASADDP
RRWSGRPRIPSEDS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcaacgccacccagcccgaagagctgcgtgtggccctggtcgatggccagatt
ctctacgacctcgacatcgagacccccgctagagagcgtaaaaaaagcaacatctacaaa
ggccgcatcacgcgcgtcgagccgagcctcgaggccgcctttgtgcaatatggtgccgag
cgccacggctttctgccgttcaaagaaatcagccgcgagtatttctctggcagtgacgac
actgaccccgccaaggtctcgatcgctgatgtgatcaaagaaggccaggaagtcgtcgtt
caggtggaaaaggaagagcgcggcaataagggtgcggcactgaccacctttatcagtctg
gccgggcgctatctggtattgatgcccaataacccccgtgctggtggcgtctcccggcgc
atcgaaggcgatgatcgcagcgagattcgcgacgccctgaaagagatcgaagtgcctgaa
ggaatgggcttgatcgtgcgcactgccggcgttggtcgcaatgccgaagagctacagtgg
gacctcgactacctgctcaatctctggagcgcggtcaaaaaagccggagaaacacaggct
gcaccgttcctgatctatcaggaaagcaacgtcatcatccgggcgctgcgcgattacctg
cgcgccgatatcggcgagatcctgattgatgaccgtgaggtttacgagcgtgcccgggaa
ttcgttcagcaggtcatgccgcataacctgcaaaagctcaagttctacgacgaccgggtt
ccgctgtttagccgctaccagatcgaaagccagattgagtcggcctttcagcgagaagtt
cgcctgccaagcggtggactgatcgtcatcgatcacaccgaggcgctcatctccatcgat
atcaactcggctcgcgccaccaagggcgcggacatcgaagaaaccgcactgaaaaccaac
gtcgaagccgctgaggagatcgcccgacagctacggctgcgcgatttgggtgggctgatc
gtgattgacttcatcgatatgggcccaaatcgcaatcagcgcgatgtggagaatcgcctg
cgcgacgccgtcaagcaggatcgggcccgggtacaggtggggcgaatctcacgctttggc
ctgctggaaatgtcccgtcagcgcttgcgctcctctctgggtgagtcttctttggaggtc
tgcagccgatgcagcggccagggcacggtgcgtagcgtcgagtcgctcgccctgtccgtc
ctgcggatcatcgaagaagaggcgatgaaggacaaaaccggcaaagtgctcgcccagctg
cccgtggacgttgcgaccttcctgctcaacgaaaagcgcaccattctcggtgcgctggaa
gcacggaatggcatcgaagtcattctgatcccgaatcgtcgtctcgaaacgccacattac
gagctacagagactgcgcacggacgaggaagagccggcggacaccagttaccgcatggcc
ggtgaggatgttgccccgagcaaggctgaggagctgctcactgcagagcgcccgaaagcc
gaggagccgctggtgaaaggggtaagccccgcaacgcctgcgcccagccgaaaggcggcc
gagcccacaacaaacatctcggagccagtaaaaacggctgcgcagtccagtccgagtgcg
acgacggaatcggcgcaagcccctggcctcctgggttggctcaagcgcattgttgttggt
agcggcgagcatgcggatgccgaaacagagcctgaggccggtagcgcatcagcaacggac
aagagcaaggacgcgagcactgaacgtcagagcaacagcagtgggcgtagcagtggagga
ggccgtcgtcgtcgtagcagcagtagcagtgcgggaacgagcagtgggtctcgcagcaac
agcagccgcagcggcagcacgcgacgcagtcgccctaacgggagtgaggagaccgcgcag
gaggtgacgccagcgcagccagagaccgaagccgaggcgccggagaccgcggatggcagt
ggcacaggcagtagcagttcaaccggtacggggcgtagccgccgtgggcgccggggtggc
cgtcgtcggcgtcgcggtggcgccaacgggcaggcaccagatacgactgaggcctctgag
gccacgcaatccgacgcggatgccaaagtagaggctgccgcagagaccgccgcagaaccg
gctccccaggccgcggagaaaccggaggccgccgaagagacaccggtcagcagcgaggat
aaaccgaaaccgcgccgtcgcagtcgttcgagcacgacgcgcaagaagagcgaagcggct
gatcaacccgccacaccagaggcagcgccgtcaactaacgaggccaaaagcaccgagccg
gaggccgatgcgccagaggcggatgcgtcaaaagcaaaggccgcgccaaaagcaagagca
aagcctaagccgaagccgaaggcgaaaccgaaaccgaaagaggcatcggcggatgacccc
cggcgttggtcgggtcggccccgtatcccctctgaggatagctaa
DBGET
integrated database retrieval system
