Spiribacter salinus: SPISAL_04325
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Entry
SPISAL_04325 CDS
T02685
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssal
Spiribacter salinus
Pathway
ssal03410
Base excision repair
ssal03430
Mismatch repair
ssal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPISAL_04325
03430 Mismatch repair
SPISAL_04325
03440 Homologous recombination
SPISAL_04325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_04325
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SPISAL_04325
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SPISAL_04325
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPISAL_04325
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Beta-lactamase2
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
AGM40959
UniProt:
R4V4T3
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Position
complement(882324..884069)
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AA seq
581 aa
AA seq
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MNRGDSIRFTDRPVPTPWPVLPDGLPGLLQRLYAARGVDGAGDLDYRLAQLPHPDTLNGL
EAAAAIMAQAIITGQRILVVGDFDADGATSCAVALRGLRALGAASVDYLVPNRFEFGYGL
SPELVEVARGHHPDLILTVDNGISAHAGVEAASAAGIPVVVTDHHLPGPTLPAAAAIVNP
QVASAEFAGQGLAGVGVCFYLLLGVRSALRNQDWFTTGRPEPGLVDLLDLVALGTIADVV
PLDRVNRVLVAQGLRRIRVGQGCPGVQALLKASRREPARVNAADLGFGAAPRLNAAGRLG
DMSLGIETLLAEDTASAEARAKELETLNQTRRELEHGMRDEALAGIEAAQLAADGALEPV
LCLYDEQWHQGVVGIVASRIKERFQRPVIAFAPAEDGLLKGSGRSIAGVHLRDLLEAVDT
RTEGAVIQRFGGHAMAAGLTLPAAQYPAFQSVLQGLVRERMGDHPPGEEIVTDGELEAAE
FSLELARQIREGGPWGPGFPEPSFRGLFHVRSQRVVGENHLKLMLSPACAPNQQLDAIAF
NALDRGWSSDTRQITGVFRLDVNYYRGREQLQLVFDYLAAA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaataggggggatagcatccggtttaccgatcggcccgtgcccacgccgtggccggtc
ctgcccgatggtctgccagggctgttacagcgcctctatgctgcgcggggcgtcgacggg
gcgggtgatctggattatcgccttgcccagctgccgcacccggatacgcttaacgggtta
gaggcggccgcggcaatcatggcgcaggccatcatcaccggccaacgcatactggtggtt
ggcgactttgatgccgatggcgcgacgagctgcgcggtggccttgcgcggcctgcgggct
ctcggtgcggcctccgttgattatctggtgccgaatcgctttgagtttgggtacggcctg
agcccggaattggttgaggtcgcgcgaggccatcacccggacttgatcctgaccgttgat
aacgggatctccgcgcatgcgggcgttgaggccgccagtgcggctggcatccccgtagtc
gtcacggatcaccatttgccggggccaacgctgccggctgcggcggccatcgttaatcca
caggtggcttctgccgagtttgccgggcaggggctggcgggagtaggggtctgtttttat
ctgctgctgggggtgcggtcagcccttcgcaatcaggattggtttacgacagggcgacct
gagcctgggttggtcgatctgctggatttggtggcccttggcaccattgccgatgtggtg
ccgcttgatcgggtcaatcgtgtgctggtggcacagggtctgcggcgcatccgagtcggg
cagggttgcccaggggtgcaggcgctgctcaaagccagtcgtcgggaaccagcgcgggtc
aacgccgccgatttggggtttggtgccgccccccgcctgaatgcggccggccgactgggc
gacatgagtcttggcattgaaacgctgctcgctgaggatacggcgagcgcggaagcccgc
gccaaagagctggagaccttgaatcagacacgccgcgagctcgagcatggcatgcgcgat
gaagcgctcgccggtattgaggccgcccagcttgccgctgacggcgcacttgaaccggtg
ttgtgtttatacgacgagcagtggcatcagggggttgtcggaattgttgcctctcggatc
aaggagcgttttcaacgcccggtgattgcttttgcgccggcggaggatgggctactcaaa
ggctctgggcgctccattgccggtgttcacctccgcgatctgctggaggcggtcgatacg
cgaaccgagggagcggtcattcagcgctttggtgggcatgccatggccgcggggctgacg
ctgcctgcggcgcagtatcccgcgttccagtccgttttgcagggccttgtgcgcgagcgc
atgggcgaccacccgcccggtgaggaaatcgtcactgacggtgagcttgaggcggcggaa
ttcagtctcgagctggcacgccagattcgagaaggcggcccctgggggccaggctttcct
gaaccgtccttccgcggcctgtttcacgttcgcagccagcgtgtcgtgggtgaaaatcat
ctcaagctgatgctctcgccagcatgcgcaccgaatcagcagctggatgctattgccttt
aacgccctcgaccgtggttggagctcagacaccaggcagatcaccggcgttttccgactc
gacgtgaattactatcgaggccgtgagcagcttcagctggtttttgactatctcgcggca
gcttga
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