Spiribacter salinus: SPISAL_05090
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Entry
SPISAL_05090 CDS
T02685
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SPISAL_05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_05090
Enzymes [BR:
ssal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SPISAL_05090
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SPISAL_05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_30
Prok-E2_A
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGM41112
UniProt:
R4VKR9
LinkDB
All DBs
Position
1034830..1038516
Genome browser
AA seq
1228 aa
AA seq
DB search
MTLALDLPLRGTRLIEASAGTGKTFTIALLYVRLILGQGRGADAVLPPLDPPDILVTTFT
EAASLELRERIRQRLVEAALAFREPLETESAADDALLLALRDRYPEADWPACARRLELAA
DWMDDATISTIHGWAQRMLREHAFDSGQLFHRELVKDLRDLQLEAVTDYWRTRVYPLDES
HAAEMVNAFGGPAKLAKQLKKLLDRPDALPVFKGTPLTEGSLTDALQAITDRKADMEKAE
TRARATWQRDPAGIEQALQALRPGMNASVFRNKADDAEFERYLQTLRAWGQGDLPLTEAT
FVQKLARDRLKLNKGYECPPLALFDDLQVWHDHQAHWEAAREALPPRGLADARQWVAERM
ASTLEANAQMGFDNMISDLADALEGPSGDALAARIREQFPLAMIDEFQDIDPAQYRIFKR
IYDLSADDADQALILIGDPKQAIYGFRGGDIHTYLAARAATAGRHHSLDRNFRSSVEAVE
AVTQLFAHAEARHPQRAFRLGDALPFETVSAAGRRERLQLGEEPAAGIIGWILEPEDDRG
VINFETYRDAAAAHCANRIAHWLNAAEAGEAGFEQPDDNPLEPLKASDIAILVRDRAEAD
SIRQALSDRGLSSVYLSDRESVFATPEARDLMAWLQAMANPESVSRVRSAMASASLAQSL
NTLDNLQQDELAWEAAQARFVDYRQRWQRHGVLPALRALMHDHEVPAALLARPNGERRLT
NLLHLAEWAQQASDSLDGEHALVRVLSEHIDDPAGDEQILRLESDANLIQVVTVFKSKGL
EYPVVALPFVCSYRSTDLSKGGGLFHAGDQPMLELAPKNTLAEESVEAADSERLSEELRL
LYVALTRARYATFLGIAPIVKGTKKTSTLHESALGYLLGGGEAIPDAPTLRRLWQAHADQ
CPAITVAPGESEWTTHQPTEPPHSLRTALTPKPPAYLSWWIASYSALKQLGTGAPDTVAA
EIRGEEHEALEAASSPLIDQRPAAGTLHDFPRGPEPGTFLHGVLEAAASIGFNQALADPG
FQRRMVQRCERRGWGEHSDALQAGLQAWLTTPLAPDNSGLVLGQLTRYRAEPDFWFTTHQ
TPTPAIDRLVRTAIHPDAPRPTLGYQTLNGLMKGFIDLLVEHAGRYWIIDWKSNWLGPDD
AAYSTDALRQAMLEKRHDLQLAVYLLALHRHLRQTLPDYDYERHVGGAQLVFLRGIQAPS
RGVAAIQPSKAFIEALDNAFAGAAEAIS
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgccctcgatcttccattgcggggcacgcggctcattgaggccagcgccggc
acgggcaaaaccttcacaatcgcgctgctctatgtgcgattgatcctgggacaggggcga
ggcgccgacgccgtattgcccccgctcgacccaccggacatcctggtgacgaccttcacc
gaggccgccagcctggagctacgcgagcgcattcgccagcgcctggtggaggccgcactg
gccttccgcgaaccgcttgaaacggaatccgccgccgatgacgcgcttctgttggccctg
cgcgaccgctaccccgaggccgattggccggcctgtgcccggcgtctggaattggctgcc
gactggatggacgatgccaccatttcaacgatccatggctgggctcagcgcatgttgcgc
gaacacgcctttgacagcggccagctattccaccgggagctggtaaaagatctgcgtgat
ctgcagctagaggcggttaccgactactggcgcacacgggtctaccccctcgacgagtct
cacgctgccgaaatggtcaacgcgtttggcgggcccgctaaactggctaaacaactgaaa
aagctcctggaccgacccgacgcgctgcccgttttcaaggggacgccgctgaccgagggc
agcttaacggacgccctgcaagccattaccgaccgcaaggcggacatggaaaaggccgag
acccgggcgcgagcgacctggcagcgggatccggcgggcattgaacaagcgctgcaagcg
ctccgtcccggcatgaacgccagtgtctttcgcaataaggcagatgacgcggaattcgag
cgctatctgcaaacgcttcgggcctggggccagggcgatctgcccctcaccgaggcaacg
tttgtgcaaaaactcgcccgcgaccgactcaagttgaacaaaggttacgagtgcccgccg
cttgccctttttgatgaccttcaagtctggcatgaccaccaggcgcactgggaagcggcc
cgcgaggcgctcccaccccgcggcctggccgatgcccgacagtgggtcgctgagcgcatg
gcctcaaccctggaggccaacgcccagatgggctttgacaacatgatcagcgatcttgcc
gatgcgcttgagggcccctcgggtgatgcccttgccgcccgcatccgtgagcaattcccg
ctggccatgatcgatgagtttcaggatatcgacccggcacagtaccggatcttcaagcgg
atctatgacctgtctgcagacgatgccgatcaagcactgatcctgatcggcgacccgaaa
caggcgatctacggctttcgaggaggcgatatccacacctacctcgcagcccgggccgcc
accgcggggcgccaccacagcctcgatcgcaatttccgctcgagtgtcgaggcggtcgag
gccgtcacccagcttttcgctcacgccgaggctcgccatccacaacgcgcctttcgcctg
ggagacgccctaccctttgagacggtcagtgcagcaggccgccgcgagcggcttcaattg
ggtgaggagcccgctgccgggatcattggctggatactcgaaccggaggacgacaggggc
gtcattaactttgagacctatcgcgatgcagccgccgcgcactgtgccaaccgcatcgcg
cactggctcaatgccgctgaggccggtgaagcgggttttgagcaacctgacgacaaccca
ctcgagccactgaaggccagtgacatcgctatcctggtgcgcgatcgagcggaggcggat
agcatccggcaggcgctgtcagatcgcgggctttcgagtgtttatctctcggatcgggaa
agtgtcttcgcgacaccggaggctcgggacctgatggcctggttacaggccatggccaac
ccggagtccgtctcccgggtacgtagcgcaatggcgagcgcctcactcgcccagtcactc
aatacgctagacaacctccagcaggatgagctggcctgggaagcagcccaggcccggttc
gtcgactatcgccagcgttggcagcgccatggcgttctgccggcccttcgcgcgttgatg
cacgaccatgaagtaccggccgccctgcttgcccgtcccaacggtgagcggcgcctgacc
aacctcctgcatctggccgaatgggcccagcaagccagcgattcccttgatggcgaacac
gcgctggtccgagtactcagcgagcacattgatgaccccgctggagatgagcagatcctg
cgcctggagagtgacgcgaacctgatccaggtcgtcacggtgttcaagtcaaagggcctg
gagtacccggtggtcgccctgccttttgtctgcagctatagatcgactgatctcagcaag
ggcggcggcctcttccatgccggcgatcaacccatgctcgagctcgcacccaaaaacacg
ctcgccgaggagagcgtcgaggccgcggacagcgagcgcctgtccgaggaacttcgtctt
ctgtatgtcgcgctcacgcgagcgcgttacgcgacattcctcggcattgcccccatcgta
aaaggcaccaagaagacctcaacccttcatgaatccgcgctcggttatttgctgggcggt
ggcgaggccatcccggatgccccgaccctgcgccgcctctggcaggcacacgccgaccag
tgccccgcgatcacggtcgccccgggagagagcgagtggaccacccatcagcccacggag
cccccccactcgctgcgcaccgcgctcacaccaaagccgccggcctatttgtcatggtgg
atcgccagctactcagcgctcaaacaactcggtacgggggcgccagacaccgtggccgct
gagatccgcggcgaggagcacgaggcactcgaggccgcatcatcgccgctcatcgaccag
cgtccagcggcaggcacgttgcatgatttccctcgggggcccgagccgggcacgttcctt
catggtgtcctggaagccgcagcgagcattgggtttaaccaggcactggcagacccgggg
ttccagcggcgtatggtgcaacgctgtgaacgacggggttggggcgagcacagcgacgcg
cttcaggcggggctgcaggcatggctcaccaccccgctggcgcccgacaacagtgggctt
gtcctcggtcagctcacgcgctaccgcgccgaaccagatttctggtttaccacccatcag
acgccaacacccgccatcgaccggctggtgagaacagccattcatcctgacgcacctcgg
cctaccctcggctatcagacactcaacggcctgatgaaaggatttatcgatctgcttgtc
gagcatgcggggcgctactggattattgactggaaatcgaactggctgggcccggatgat
gccgcctattcaaccgacgccctgcggcaggccatgctcgaaaaacgccatgacctgcag
ctcgccgtttacttactggccctgcatcgccacttgcgccaaaccctgccggactacgac
tacgaacgtcacgtcggcggtgctcagttggtctttttacgcggaatacaggccccctcg
cgcggggttgccgccattcagccatcgaaggcgttcatcgaggcactggataacgccttc
gccggcgccgcggaggccatatcgtga
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