Spiribacter salinus: SPISAL_05575
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Entry
SPISAL_05575 CDS
T02685
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssal
Spiribacter salinus
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_05575
Enzymes [BR:
ssal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPISAL_05575
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SPISAL_05575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
FtsK_SpoIIIE
NACHT
AAA_23
AAA_16
ABC_tran
AAA_24
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AGM41209
UniProt:
R4V5L8
LinkDB
All DBs
Position
complement(1134280..1138017)
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AA seq
1245 aa
AA seq
DB search
MTDRRRKPAEQREQAKAARQATSLNPGFGQDLPVLEHAEEIAEAVRQHPVVVICGETGSG
KSTQLPKLMLELGRGVDGAIAHTQPRRIAARSLATRVAEECDTRVGEGVGYRVRFSDRTS
PGTRVKLLTDGMLLAETQSDADLADYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPELRV
IITSATIDPQRFAHHFDDAPVIEVSGRTYPVETRYRPLAAQSEDERERSLRQGVLDAVDE
LAREGRGDVLVFLPGEREIRQCAEALRKHHSAWTEVLPLFGRLSAAEQQRVFAPHAGRRI
VLATNVAETSLTVPGIRYVVDSGLARISRYSYRTKVQRLPVEPIAQSSADQRAGRCGREG
PGVCIRLYEQDDYEARPRFTDPEILRTNLASVILQMKHLRLGAIEQFPFVEPPDPRYVRD
GLKLLDELGALDRRQNLSRLGRQLARLPIDPRLARILLAGNREGALTEMLVLAAALSIQD
PRERPMDSREAADAAQSTWQDRQSDFAGLLRLWRDYREQAQHLSRRKLQAWCHTHFLSHV
RMREWADVHGQLHGLVRGMGLAENAEPAKAVAIHRALLTGFLSNIARREDGSEYRGARDL
KLAIHPGSGVVKKRPRWIVAAELVETRRVFARTVAEVRPEWIEPLARHLLKRRVHSPWWQ
ADKGKVMGREELTLYGLPIVSGRKIDYAQVAPAEAREVFIRDGLLGEPPPQPPEFLSANQ
ALVAELETLEAKTRRRDVVADLDALYAFYDEALPAEVVDGPSLQRWLDAGGDDRSLRLSR
EQLMARGVESTGVAYPDHLAISGVQLPLRYHFEPTASDDGVSVCIPIAALNALDPEPFEW
LVPGLLEEKVITLIRALPKSLRRHFVPVPDFAQAVLEALPDREGSLESAVRGELRRMTGI
DLPGDIWEAVSLPAHLSMHFIVLDEEGQTIASGRDLPALQRDLAGRATAQFAARTEPGFE
RTGITDWDFGDLPDQVAFDQGGITLQGYPALQVESEGLALRLLDSPERAETIHRAGVRQL
LMKRFAQQARQLRRGLEGLDRMALLYRDVDGPDGLRRDLTAAVFDQVFLQQGVPRDRAGW
LTCCEAGREGLIEAGEQLRDRVSDILSRQEQVRRALKGNVSLGLIDSYQDIRHQLDGLIY
PGFLLETPPERLADLPRYLEGLRRRVERLQRDPSRDQAGLAVIQPHQQRLDETRERHARR
AIRDPALEQVRWLIEEYRISLFAQELGTRERVSEKRLALAWEDVR
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaccggcggcgcaagccggctgagcagcgggagcaggccaaagcggctcggcag
gccacttcactcaatccggggtttggccaggatctcccggtccttgagcacgcagaagag
attgcggaggcggtccggcagcacccggtcgtggtgatctgcggcgagacggggtcaggc
aagagcactcaactgcccaaattgatgcttgagcttggtcgcggcgtcgacggggcaatc
gcgcatacgcagccacgacggatagcggcacggagtctcgcaacgcgggtcgccgaggaa
tgcgatacccgcgttggcgaaggggtgggctaccgagtgcgcttcagcgaccgaacaagc
cctggtacccgggttaagctattaacggacggtatgctgcttgccgaaacgcagagtgat
gccgatcttgccgattacgacaccattattatcgacgaggcccatgagcgaagtctgaat
atcgacttcctgctcggatacctgaagcgtttactgccgcggcgtcccgagctgcgcgtg
atcattacctccgccacgatcgacccccagcgatttgcccaccacttcgacgatgccccc
gtgatcgaggtttcaggccggacctaccccgtcgagacccgctatcgcccgttggcggct
cagagcgaggacgagcgcgaacgcagcttacgccagggcgtgctggatgccgtggatgag
ctcgcccgcgaaggccgtggtgacgtgctggtcttcctgccgggtgagcgtgaaattcgt
cagtgcgcggaggcgctgcgtaaacaccacagcgcctggactgaggtgctgcccttgttc
gggcgtctgtccgcggccgaacagcagcgggtgttcgcgccccatgcgggacggcgcatt
gtgttggcgaccaatgtcgcggagacgtcactgaccgtacccggtattcgctatgtggtt
gacagtggcctggcgcgaatcagccgctacagctatcggaccaaggtccagcgcctgccc
gtggagcccattgctcagtccagtgccgatcagcgagcgggacgctgtggccgagaaggc
cccggcgtctgtatccggctctacgagcaagacgactacgaggcaaggccgcggttcact
gacccggagattcttcgcacgaacctggcctcagtgattctgcagatgaaacatctgcgc
ctgggcgccatcgagcagttcccgtttgttgagccgccggatccacgttacgtccgcgac
gggctcaagctgcttgacgagctgggtgcgcttgaccgtcggcagaacctctcgcggctc
gggcggcagttggcgcggctgccgattgacccgcgccttgcccgcattctgctggccggg
aatcgggaaggggcgcttactgagatgctggtcctggccgcagcgctgtcgattcaggac
ccgcgcgaacgcccaatggacagccgtgaggcggcagatgccgcccagtcgacctggcag
gatcgccagtctgactttgcggggctcttgcgtctgtggcgcgattatcgagagcaggcg
cagcatttgagccggcgtaagctccaggcctggtgccacacccatttcctttcccatgtg
cgcatgcgcgaatgggccgatgtccatggtcaactgcatggcctggtgcggggcatgggc
cttgccgagaacgctgagcccgccaaggcggtggcgatccatcgcgccctgttaaccggt
tttctgtccaacatcgcccgccgggaagacggtagtgagtaccgcggcgcgcgggatctg
aaactcgccattcatcccgggtccggagtcgtcaaaaagcgcccgcgctggattgtggct
gcggagcttgtcgagacgcggcgcgtgttcgcgcgcacggtcgctgaggtgcggcctgag
tggattgagccactggcccgccacctgctcaagcgccgggtccacagcccgtggtggcaa
gcggataagggcaaagtcatgggtcgtgaagagctcacgctctacggcctgccgattgtg
agtgggcgcaagatcgactacgcccaggttgcgcccgctgaggcgcgcgaggtctttatt
cgagacgggctcctgggcgaaccgccgccgcagccccccgagttcctgagcgccaaccag
gcgcttgtcgccgagctggagacactggaggccaagacccgtcgccgcgatgtcgttgcg
gacctggatgcgctgtatgccttctacgatgaggcgctgccggcggaagtcgtcgacggt
cccagtctgcagcgctggttagacgcgggcggggatgaccgatcgctgcgcctgtctcgt
gagcagctcatggcgcgcggggtggagagtaccggggtcgcctatcccgatcatctggcc
atcagtggcgtgcaactgccgctgcgatatcacttcgagccgacggccagcgatgacggc
gtcagcgtctgcattccgattgctgcgctgaatgccctcgatccggagccgttcgaatgg
cttgtcccgggcctgttagaggaaaaggtcattaccttgatccgggccttaccgaagtcc
ttgagacggcatttcgtgccggtccctgattttgcccaggccgtgcttgaggccctgcca
gatcgtgaggggtcgcttgagtcagcggtgcgcggcgagctccggcggatgaccggcatt
gatctgccgggggatatctgggaggcggtgagcctgccggcgcatctgagcatgcatttt
attgtgctggatgaggaagggcagacgatcgcgagcggccgcgacctgccggcgcttcag
cgggatctggccgggcgcgcgacggcgcagtttgcagcacgtaccgagccgggtttcgag
cgcaccgggatcacggattgggactttggtgatctgcccgatcaggtcgcgttcgatcag
ggcggcatcaccttgcaggggtatcccgcactgcaggtcgaatcggagggcctggctttg
cgactactcgacagtcctgaacgggccgaaacgatccatcgggccggtgtgcgtcaattg
ctcatgaagcgctttgcccagcaggcccgacagctgcggcgtggcctcgaggggctggat
cgcatggcgttgctttatcgggatgtggatggcccggacggtcttagacgcgatctgacg
gccgcggtttttgaccaggtctttctgcagcagggcgtgccccgcgaccgggccggttgg
ctgacctgttgcgaagcgggtcgcgagggcctgattgaggcgggtgagcaactgcgggat
cgcgtctctgatatcctctcgcgccaggagcaggtccgccgggcgctgaaaggcaatgtc
tcgctggggctgattgacagctaccaggatattcgtcatcagctcgatggcttgatttac
cccggtttcctgcttgagacgccgcctgagcggcttgcggacctgccgcgctaccttgaa
gggttgcgacggcgagtcgagcggcttcagcgcgatccgagtcgggaccaggccgggtta
gcggtgattcagccccatcagcagcggctggatgaaacgcgtgaacggcatgcccgccgc
gctatccgtgacccagcgctggagcaggtccgatggctgattgaagagtatcggatctcg
ctgtttgcacaggagctcggaacccgtgagcgcgtctcggaaaagcgcctggcgctggca
tgggaagatgtgcgctag
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