Spiribacter salinus: SPISAL_05940
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Entry
SPISAL_05940 CDS
T02685
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPISAL_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssal03019
]
SPISAL_05940
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_05940
Enzymes [BR:
ssal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPISAL_05940
Messenger RNA biogenesis [BR:
ssal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPISAL_05940
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPISAL_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
Helicase_C
RecQ_Zn_bind
DEAD
Motif
Other DBs
NCBI-ProteinID:
AGM41282
UniProt:
R4VLG1
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All DBs
Position
1225953..1227584
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AA seq
543 aa
AA seq
DB search
MISPLIALMHDQVTALRQQGVRAAALNSSLDPVERIEVEQAIEAGTLDLLYVAPERLLSG
DLLNRLSRRPVALFAIDEAHCVSQWGHDFRPEYLQLGILGERFPAVPRVALTATADTRTR
EEIHRQLLPADARVFVSSFDRPNIRYHVGVKEKPREQLLRFIRERHAGESGIVYCMSRRA
TEQIADWLNARDIPALAYHAGIDPAQRQAHQGRFLREDGLVMVATVAFGMGIDKPDVRFV
AHLDLPKTLEAYYQETGRAGRDGLPAEAWLIYGLQDIYRLRQMSAESTAGDDHKRREHQR
LEALLGFCETTGCRRPALLGHFSETHAGECGNCDNCLTPPATWDATDAARRVLSCVYRTG
QRFGAKHVIDVLRGADDERIRRLGHDQLTTWGIGQDLAAGLWQSVIRQLLAHGLLAPDPN
GHGGLQLTDACRPVLRGETRIELREDALPTRQRPSHQRIEAADVAADPDTWATLRAERRR
LAEAEGVPPYIIFHDATLLAMLEQQPRNLAEMADVPGVGAHKLSRYGEAFLAALAASPST
SGA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
gtgatctcgccgctgattgcactcatgcatgaccaggtcaccgcactgagacagcagggc
gtgcgggccgccgcgctcaattccagtctggatccggtggagcgcatcgaggttgaacag
gcgattgaagccggcacccttgatctgctttatgtcgctcccgaacggctgctgtccggc
gatctgcttaaccggctctcgcgccgacctgtcgcactgtttgccatcgacgaggcgcac
tgcgtgtcgcaatggggacatgatttccgacccgaatatctccagctgggcattcttggg
gagcgcttccccgcggttccccgggtcgcgctgaccgcgaccgccgatacccgcacccgc
gaggagattcatcgccagctgcttcccgccgatgcccgcgtcttcgtctcaagcttcgat
cgccccaacattcgctatcacgtcggcgtcaaagaaaaaccccgagagcaattactgcgc
ttcatccgcgagcgtcatgccggagaatccggcattgtctactgcatgtcccgccgggcg
accgagcagattgccgactggctgaacgcgcgggatatccccgcgcttgcctatcacgcc
gggatcgaccctgcgcagcgccaagcacaccagggccgattccttcgcgaggatggcctt
gtcatggtcgccaccgtcgcctttggcatgggtatcgacaagccggatgtgcgttttgtc
gcgcatctggatctacccaagacccttgaggcctattaccaggagaccgggcgcgctggc
cgcgatggcctgccggcggaggcctggctgatttacggcctgcaggacatttaccggctt
cgacagatgagcgccgagtcgaccgcaggcgatgatcacaaacgccgggaacatcagcgc
cttgaagccctgctgggtttttgtgagacgaccggttgccggcggccggcattacttggc
catttcagtgagacgcacgccggtgaatgcggcaactgcgacaactgccttaccccgccc
gctacctgggacgccacggatgcggctcgccgagtactgtcctgcgtctaccgcacgggc
cagcgctttggggccaaacatgtcattgacgtcctgcggggcgctgatgatgagcggatt
cggcgactgggccacgatcagttaaccacctggggcattggccaggatctggccgcagga
ctatggcagtccgttatccgccagcttctggcccacggcctgctcgcccccgatccgaac
gggcacgggggactgcagctcaccgatgcctgtcgcccggttctgcggggagagacacga
atcgagctgcgtgaggatgcgctgccaacccgccagcgcccatcccaccaacgcatcgag
gcagccgacgtggcggccgacccggacacttgggccaccctgcgggccgagcggcgccgg
cttgctgaagcagaaggcgtgccgccttacattatctttcacgacgccaccctgctggcc
atgctcgagcagcagccgcgtaatctggccgagatggccgatgtgcccggggtcggcgca
cacaagctcagccgctatggtgaggcgttcctagccgcgctcgcggcttccccgagcact
tcaggcgcctga
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