Swingsia samuiensis: E3D00_01140
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Entry
E3D00_01140 CDS
T06080
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssam
Swingsia samuiensis
Pathway
ssam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D00_01140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssam03019
]
E3D00_01140
Enzymes [BR:
ssam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3D00_01140
Messenger RNA biogenesis [BR:
ssam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3D00_01140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF6362
Motif
Other DBs
NCBI-ProteinID:
QDH16334
UniProt:
A0A4Y6UH44
LinkDB
All DBs
Position
complement(243700..245028)
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AA seq
442 aa
AA seq
DB search
MTSFAELNLAEPIQKALGEEGYITPTPIQAGSIPYLLDGRDLLGLAQTGTGKTAAFALPI
LDYLLREKKAPARKGVRALILAPTRELVSQIGQNCASYARHTKLSHAVIFGGVGQGRQVE
AMRKGVDILVAAPGRLLDLIGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRKIMTFLPEK
RQTVLFSATMPPSIHDLAHSLLKDPATVQVTPESSTVDRIRQAVMFLDTEHKKDATLMLV
EAPNVKRAVVFTLMKHEANKVAEFLSKNGITAEAIHGNKSQGARERAMSGFRDGTVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLKDI
EKKIGKSIAVVTDHPYHSDAAQNSTMRPPVLGGGGRRGGGAPRRGGSSGGAHSGNGNRGP
RRSGGASSRGGSSRGGGGGRRH
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactagctttgcagagcttaatcttgctgagccaatacaaaaggcgcttggtgaagaa
ggctatatcactcccactccgatacaggcagggtctattccatatcttttggatgggcgt
gatcttcttggattagctcaaacaggaacaggcaaaactgctgcttttgctttgcctatt
ttggattatttgttacgcgaaaagaaagcgcctgctcgaaaaggggtaagagccttaatt
ttagcccctacacgagagctggtttcccaaataggccagaattgtgcctcttatgcacgg
catacaaaattgtcgcatgccgttatctttggtggcgttggccaagggcgacaggttgag
gccatgcgtaagggtgtggatattctggtcgcagctcctgggcgtttgttggatctgata
ggccaagggcatatagatttgtccgggcttgaagtattagtgctggatgaagccgaccgg
atgctcgatatgggatttgttcgggatattcggaagattatgacgttcttacctgaaaaa
cgtcagactgttttattctccgcaacaatgccgccatctattcacgatctggctcattca
ttattgaaagacccggcaacggtacaggttacgcctgaatcaagtacggttgaccgtatt
cgtcaagcggtgatgtttctcgatacagagcataagaaagatgcaaccttgatgttggtt
gaggcccccaacgtcaaacgtgctgttgtctttactctaatgaagcatgaagccaataaa
gttgctgaatttttgagcaagaatggcattacagcagaagcaattcacgggaataaatcg
caaggagcccgtgaacgtgcgatgtctggcttcagggatggaacggtaaaggtgcttgtc
gcgacagatattgcagcgcgcgggatcgatgttgatgatgtaacgcacgtctttaattat
gacttaccaaatgtgcctgaatcttacgttcatcgtattggccgtacggcccgtgcaggg
cgtgatggttgggccgtttctttgtgcgatgcagagcaacgggcttggttgaaggatatc
gagaaaaaaatcggtaagtccatcgctgttgtgacagatcatccttatcactccgatgca
gctcaaaactctacgatgcggccacctgttcttggtggtggtggacgccgtggaggaggt
gctccgcgtcgtggcggaagttctggaggcgcgcattcagggaacggcaatagagggcca
aggcgttctggaggagcatcatctcggggagggtcatcccgtggcggcggtggtggacgg
cggcactag
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