Swingsia samuiensis: E3D00_01885
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Entry
E3D00_01885 CDS
T06080
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ssam
Swingsia samuiensis
Pathway
ssam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3D00_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssam03021
]
E3D00_01885
03400 DNA repair and recombination proteins [BR:
ssam03400
]
E3D00_01885
Enzymes [BR:
ssam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3D00_01885
Transcription machinery [BR:
ssam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3D00_01885
DNA repair and recombination proteins [BR:
ssam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3D00_01885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
QDH16456
UniProt:
A0A4Y6UJ06
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All DBs
Position
complement(402942..403961)
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AA seq
339 aa
AA seq
DB search
MVLQKNWQSLIKPEKLEVEPGTVPSRIATVVAEPLERGFGMTLGNALRRILLSSLQGAAV
TAIQIDGVLHEFSAVPGVREDVTDIVLNVKQLALRMHGEGPKRMILTATGPGEVTAGQIQ
AGHDIEIMNPDLVICTLDDGVKLGMEFTVNMGKGYVAAAANRPEDAPIGMIPIDAIYSPV
RRVSYKVEQTRVGQVTDYDKLLLTVETNGAVTPEDSLALAARILQDQLQLFINFDEPRPV
EQEEPQDDLPFNRNLLRKVDELELSVRSANCLKNDNIVYIGDLVQKSEQEMLRTPNFGRK
SLNEIKEVLTGMGLSLGMNVPAWPPENIEDLAKRLDENF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
ttggttctccagaaaaactggcagtccctcatcaagccggagaagcttgaagtcgagccc
ggcacggttccttcgcgtattgctactgtagtggcagaaccgttagagcgcggtttcggt
atgacgcttgggaatgcgctgcgtcgtattcttctgtcttctctgcagggtgcagcagtt
actgctattcaaattgatggcgttctgcatgaattctcagcggttcctggagtgcgtgaa
gacgttacggatatcgtccttaacgttaagcaacttgctttgcgtatgcatggtgagggg
ccaaagcgcatgattttgacggctacagggccaggagaagttactgcggggcaaattcag
gctgggcatgatattgaaatcatgaatccagaccttgtgatttgtactttagatgatggt
gtaaagctcggcatggagtttaccgtcaatatgggtaaaggatatgttgcagcagcagca
aaccgcccagaggatgcgcctattggcatgattccgattgacgcgatttattctcctgta
cgccgcgtttcttacaaagttgagcagacgcgtgttggtcaggttactgactatgacaag
ctgctgttaacggttgagacaaacggcgctgtaacacctgaagatagtttggctcttgca
gcccgtattcttcaggatcaattgcagctcttcatcaactttgatgagcctcgtcctgtt
gagcaggaagagccacaagatgatctaccgttcaatcgtaatcttctgcgtaaggttgat
gagcttgagctttctgtgcgtagcgcaaactgcctcaagaacgataacatcgtctatatt
ggtgatttggtgcagaaatccgaacaggaaatgctccgtacgccaaactttgggcgtaaa
tcgcttaatgagatcaaggaagttctcaccggtatgggcttgtcgcttggcatgaatgtc
cctgcttggccacctgagaacattgaagatctcgccaagcgtcttgatgagaacttctaa
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