Swingsia samuiensis: E3D00_02345
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Entry
E3D00_02345 CDS
T06080
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssam
Swingsia samuiensis
Pathway
ssam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D00_02345 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssam03019
]
E3D00_02345 (pnp)
03016 Transfer RNA biogenesis [BR:
ssam03016
]
E3D00_02345 (pnp)
Enzymes [BR:
ssam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
E3D00_02345 (pnp)
Messenger RNA biogenesis [BR:
ssam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E3D00_02345 (pnp)
Transfer RNA biogenesis [BR:
ssam03016
]
Prokaryotic type
tRNA degradation factors
E3D00_02345 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QDH16543
UniProt:
A0A4Y6UG51
LinkDB
All DBs
Position
complement(489780..491930)
Genome browser
AA seq
716 aa
AA seq
DB search
MFDYFRKEIEWAGRPLVLETGKIARQADGAVMVTYGDTVVLCTAVGAKTVKEGQDFFPLT
VNYQEKAYAAGKIPGGFFKREGRASEAEVLTARLIDRPIRPLFPENFRNEVQVIATVLSH
DMENDPSIVALIGCSAALTLSGIPFFGPVGASRIGQIDGKLVVNPTLSEMKQSTLDLVVA
GTSEGVLMVESEAGELSESVMLEAVTLGHSAFQPVIDAIIALAEHAAKEPWDLPTPTKEE
IALRKRVEKIGNKLMADAYKEKSKQARHVKVAEAKERINETLVEEGFDADLAKPMLKELE
AQVVRGSILKTSLRIDGRDLKTVRPILAEVGVLPRAHGSALFTRGETQALVVATLGTAQD
EQIIDALEGEHRSNFMLHYNFPPYSVGEAGRLGSPGRREIGHGKLAWRALKPLIPSKEQF
PYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDRGFAVLSDI
LGDEDHLGDMDFKVAGTERGITALQMDIKITSITPEIMKIALEQAHEGRIHILGEMAKAL
TEGRSDVSGNAPKVTTMSVPKEKIRDVIGSGGKVIREIVEYSGAKVDIAEDGVITIAASN
DEQAQKAIKRIEGIVAEPEIGRIYEGRVVKTADFGAFVNFLGPRDGLVHISELAAGRVAK
TTDVVKQDDTVKVKVIGFDDRGKVKLSMRVVDQETGADISESVGAKPGRTPRRDAE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattattttcgtaaagaaattgaatgggctggtcgccccctagttctggaaaca
ggtaaaattgctcgccaggctgatggcgctgtgatggttacctatggagatactgttgtt
ttatgtacggcagttggtgcaaaaaccgttaaagaagggcaagattttttccctcttacc
gttaactaccaagaaaaagcatacgcagcaggaaaaatcccaggtggattttttaagcgt
gaaggccgtgcatcagaagctgaagttctgactgcgcgtttgatcgaccgtcctattcgt
ccgttgttccctgagaatttccgtaacgaagttcaagtgattgcaacggtgctcagccac
gatatggagaatgatccttcaatcgttgctttgatcggttgttcggctgctttaacattg
tcgggtattcccttcttcggccccgttggtgcgtctcgtataggacaaattgacggtaag
cttgttgttaacccaacactctctgaaatgaagcagagcacactggatctggttgtcgcc
ggtacgtctgaaggtgtgttgatggttgagtcagaagcgggtgagctttctgaaagtgtg
atgcttgaagcggtcactctcggccattcagcgtttcagcctgtgattgatgcgattatt
gcacttgctgagcacgctgcgaaagagccatgggatcttccaactccgacgaaagaggag
attgctcttcgtaaaagagtggaaaaaatcggcaataaattgatggcagatgcttacaaa
gagaaaagtaagcaagcacgtcatgttaaagttgcagaagcaaaagagcgcatcaacgag
acgttggttgaagaaggctttgatgctgatcttgctaagccaatgcttaaagaactggaa
gcgcaggttgtgcgtggatccattcttaagacgagcttgcgtattgatggccgtgatctg
aaaacagtacgtccaattcttgcagaagttggtgttcttcctcgtgcacacggttcagca
ttgtttacacgtggtgaaacgcaagcattagtcgttgcaacgcttggaacggcgcaggat
gagcagattatcgatgcccttgaaggtgagcatcgttcgaacttcatgctgcattataat
ttccctccctattctgttggagaagcaggccgtcttgggtctcctggccgtcgtgaaatt
gggcatgggaagttggcatggcgtgctctgaagcctctgattccatctaaagaacagttc
ccatatacgatgcgtgttgtctctgaaattacagagagtaacgggtcctcctctatggca
accgtttgtggtacctccttggctcttatggatgctggtgtgccattgccacggcctgtt
gctggtatcgccatgggattgattaaggaagatcgtgggtttgcggttctttctgatatt
cttggtgatgaagatcatcttggggatatggactttaaagttgcgggtacagaaagaggt
atcactgctttgcagatggatattaagatcacctccatcacacctgaaattatgaagatt
gctcttgagcaagctcatgaaggtcgtatccatattctgggtgaaatggccaaggcgttg
acggaaggtcgttcagatgtatctggaaacgcaccaaaagtgacgacaatgtctgttcct
aaagagaaaatccgtgatgtgattggatcgggtgggaaagttatccgtgagatcgttgaa
tattcgggtgctaaggtcgatattgctgaagatggtgttattaccattgcggcttcaaac
gacgagcaggctcaaaaagcgattaagcgtatcgaaggcattgttgctgaaccagaaatt
ggccgaatttatgaaggtcgtgtcgtgaaaacggctgactttggagcttttgtcaatttc
cttggccctcgtgacgggttggttcatatttctgaactggcagctggtcgtgttgcaaag
acaacggatgttgtgaagcaagatgatactgttaaggtcaaggtgattggctttgatgat
cgtggtaaagtcaagctgtcaatgcgtgttgttgatcaggaaacaggtgctgatatttct
gaaagtgttggcgcaaaacctggtcgtacacctcgccgcgacgcagagtaa
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