Sphingomonas sanxanigenens: NX02_00235
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Entry
NX02_00235 CDS
T03929
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NX02_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssan03021
]
NX02_00235
Transcription machinery [BR:
ssan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NX02_00235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AHE51816
UniProt:
W0A454
LinkDB
All DBs
Position
complement(41355..43388)
Genome browser
AA seq
677 aa
AA seq
DB search
MAKANSQEMTDKTDGSGDAPLIDLNEASLKKLIARAKKRGYITYDQLNEALPQDQMSSDQ
LEDVMSALNEMGVNIVENEDAGEDAEPEDQADDEAETPDSNDGPSANVAEKKRESVDRTD
DPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSNALNEGT
MQLREILDLDAMLSKDPAPESLTEDGEEADGEISEKTAGPSYKEEEDVEEAPAEDDDESM
TERRAKRPSDDEEEDNTLSLAQMEETLKPAALEKFATITSLYKKFTKLQAARIEVLGVGN
DFGAAEEKKYQKLREDLTAEVESVQFHGAKIEYLVDQLYSYNRRLTALGGQMLRLAERHK
VPRKDFLDRYLDHELDEGWTAAVATIDKKWGNFVAIEGAAVDRIRAEIGEIAQATGMALA
EFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGR
EPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAI
QANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKMRSFLDQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggcgaactcccaggaaatgacggacaagaccgacggtagcggcgatgcgccg
ctcatcgacctcaacgaagcgtcgctcaagaagctgatcgcccgcgccaagaagcgcggc
tacatcacgtacgatcagctcaacgaggcgctgccgcaggatcagatgtcgtcggaccag
ctcgaagacgtcatgtcggcgctcaacgaaatgggcgtgaacatcgtcgagaacgaggac
gccggcgaggacgcggagcccgaggaccaggccgacgacgaggccgaaacgccggattcc
aatgacggcccgtcggccaatgtcgccgaaaagaagcgcgagagcgtcgatcgcaccgat
gacccggtgcgcatgtatctgcgcgaaatgggcgcggtggaactgctcagccgcgagggc
gagatcgccatcgccaagcgtatcgaggcaggccgcgacacgatgatcctgggtctctgc
gagagcccgatcaccttcaacgcgatcatcgactggtcgaacgcgctcaacgaaggcacg
atgcagctccgcgagatcctcgatctcgacgcgatgctctccaaggatccggcgcccgaa
agcctgaccgaggacggcgaggaagccgacggcgagatttccgagaagaccgccggcccg
tcgtacaaggaagaagaggacgtcgaggaagccccggcggaagacgacgacgagtcgatg
accgagcgccgcgccaagcgcccgtcggacgacgaggaagaggacaacaccctcagcctc
gcgcagatggaagagacgctgaagccggccgcgctcgaaaagttcgcgacgattacctcg
ctctacaagaagttcaccaagctgcaggccgcgcgcatcgaagtgctcggcgtgggcaac
gacttcggtgcggccgaggaaaagaagtatcagaagctgcgcgaggatctcaccgccgag
gtggagagcgtgcagttccacggcgcgaagatcgaatatctcgtcgaccagctctacagc
tacaaccgccgcctgaccgcgctgggcgggcagatgctgcgccttgccgagcgccacaag
gtgccgcgcaaggacttcctcgaccgctatctcgaccatgaactggacgagggctggacc
gccgcggtcgcgacgatcgacaagaaatggggcaatttcgtcgccatcgaaggcgccgcg
gtcgaccgcattcgcgccgagatcggggaaatcgcgcaggcgaccggcatggcgctcgcc
gagttccgccgcatcgtcaacatggtgcagaagggcgaacgcgaggcgcgcatcgcgaag
aaggagatggtcgaggccaatctccgcctcgtgatctcgatcgccaagaaatacacgaac
cgcggcctgcagttcctggatctcatccaggagggcaatatcggcctgatgaaggcggtc
gacaaattcgagtatcgccgcggctacaagttctcgacctacgccacctggtggatccgg
caggcgatcacccgctcgatcgccgatcaggcgcgcacgatccgcattccggtgcacatg
atcgagacgatcaacaagctggtgcgcaccagccgccagttcctccacgagcagggccgc
gagcccacgcccgaggagatggcagagcggctctcgatgccgctcgagaaggtgcgcaag
gtgatgaagatcgccaaggagccgatcagcctcgaaacgccgatcggcgacgaggaggat
tcgcacctgggtgacttcatcgaggacaagaacgcgatcatcccggtcgatgccgcgatc
caggccaacctcaaggaaacggtcacccgcgtgctcgcctcgctcaccccgcgtgaggaa
cgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaagaggtc
ggccagcaattctcggtgacccgcgaacgcatccgccagatcgaggcgaaggcgctgcgc
aagctcaagcacccgagccgcagccgcaagatgcgcagcttcctcgatcagtga
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