Sphingomonas sanxanigenens: NX02_05940
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Entry
NX02_05940 CDS
T03929
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NX02_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssan03019
]
NX02_05940
03016 Transfer RNA biogenesis [BR:
ssan03016
]
NX02_05940
Enzymes [BR:
ssan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NX02_05940
Messenger RNA biogenesis [BR:
ssan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NX02_05940
Transfer RNA biogenesis [BR:
ssan03016
]
Prokaryotic type
tRNA degradation factors
NX02_05940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
AHE52923
UniProt:
W0A9A5
LinkDB
All DBs
Position
1171948..1174161
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AA seq
737 aa
AA seq
DB search
MPSRQQILDFITRSDQPAGKREIARAFALHGHDKIALKALLKDMADEGLIDSAPGRAFHK
MGGVPKVTVLRIVDIEGDQPVAVPERWEADGKPPPRIRVVERGKRSALGVGDRILARTEE
KGAGWLAHPMKKLARGEELILGVVEEQEGRLWLRAVDKRERRDTQISDVGPARPGDLVLA
EKTGRPPRITAKVTEVLGDPFAPRAFSLIAIHKFGIPDRFKEETLEEADDIATQALGARE
DLRHLPIVAIDPADARDHDDAVWATADEDPANPGGWRAIVAIADVSFYVRPGSQLDREAR
KRGNSVYFPDRVVPMLPERLSADVCSLKEGQDRAAMVCHLVIDRAGKILAQRFTRAVIRV
AANIAYEDAQARIDAGAGALVEEALKPLWACWRALAAARDKREPLDLDLPERRVVLDETG
RIESIAIRERLDAHRLIEDYMIAANVAAAKALEAKKAPVMYRVHEPPSREKLVALKDYLD
TFDISFALGQVVRPATFNQLIKRLDANDEATRALVMEQMLRSQTQAYYAPVNAGHFGLAL
GSYAHFTSPIRRYADLVVHRALVGAYALEPEARATRLSEEDAAAMVRLGETISQAERRAM
EAERETIDRYVAAFLATRIGEVLDTRITGVQSFGFFATVAGFGGDGLVPVSTLGAERFRY
DEASQTLEGEESGDTYARGQLLPLRLVEANPVSGALRFELPEGVNHMPMRHDRPRKDRRI
VGKRGRPANVRHQGRRR
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
ttgcccagccgccagcaaatcctcgacttcatcacgcgttccgaccagccggccggcaag
cgcgaaatcgcgcgtgccttcgcgctgcatggccatgacaagatcgcgctgaaagcgctg
ctcaaggacatggcggacgaggggctgatcgacagcgctcccggccgcgccttccacaag
atgggcggggtgcccaaggtgacggtgctgcgcatcgtcgacatcgagggcgaccagccg
gtggcggtacccgagcgctgggaggcggacggcaagccgccgccgcggatccgggtggtc
gagcgcggcaagcgatcggcgctgggcgtgggcgatcgcatcctcgcgcgcaccgaggaa
aaaggcgccggctggctggcgcatccgatgaagaagctcgcgcgcggcgaggaactgatc
ctcggcgtcgtcgaggagcaggaagggcggctgtggctccgcgcggtcgacaagcgcgag
cgccgcgatacccagatttcggacgtcggcccggcccggcccggcgacctcgtgctcgcc
gagaagaccggccggccgccgcggatcaccgccaaggtcaccgaggtgctgggcgatccc
ttcgcgccgcgcgcgttcagcctgatcgcgatccacaagttcggcattcccgaccgcttc
aaggaagagacgctggaggaggcggacgacatcgccacccaggcgctcggcgcgcgcgag
gacctgcgccatctgccgatcgtcgcgatcgatcccgccgatgcgcgcgaccatgacgat
gcggtctgggcgacggccgatgaggaccccgccaatccgggcggctggcgcgcgatcgtc
gcgatcgccgatgtcagcttctatgtgcggccgggatcgcagctcgaccgcgaggcgcgc
aagcgcggcaacagcgtctatttccccgatcgcgtcgtgccgatgctgccggaacggctc
tcggccgacgtctgctcgctcaaggaagggcaggatcgcgcggcgatggtctgccatctg
gtgatcgaccgcgccggcaagatcctcgcgcagcgcttcacccgcgcggtgatccgcgtg
gcggcgaacatcgcctatgaggatgcgcaggcgcgcatcgacgccggcgcgggggcgctc
gtcgaggaggcgctgaaacccctatgggcgtgctggcgcgcactcgccgccgcacgcgac
aagcgcgagccgctggacctcgacctgcccgagcggcgtgtcgtgctcgacgagaccggc
cgcatcgagagcatcgcgatccgcgagcggctcgacgcgcaccggctgatcgaagactat
atgatcgccgccaacgtcgccgccgccaaggcgctggaggcgaagaaggcgccggtgatg
taccgcgtgcacgaaccgccgagccgggagaagctggtcgcgctcaaggactatctcgat
accttcgacatcagcttcgcgctggggcaggtcgtgcgccccgccaccttcaaccagttg
atcaagcggctggatgccaatgacgaggcgacccgcgcgctggtgatggaacagatgctg
cgcagccagacacaggcctattatgcgccggtcaatgccggccatttcggcctcgcgctc
ggcagctatgcccacttcaccagcccgatccgccgctatgccgaccttgtcgtccaccga
gcgctggtcggtgcctatgcgctggagcccgaggcgcgcgccacccgcctgtccgaggag
gatgccgccgcgatggtacggctgggcgagacgatcagccaggccgagcgccgcgcgatg
gaggcggaacgcgagacgatcgaccgctatgtcgccgccttcctcgcgacccgcatcggc
gaggtgctcgatacgcggatcaccggcgtccaaagcttcggcttcttcgccaccgtcgcc
ggcttcggcggggacgggctggtgccggtctcgacgctgggcgccgaacgcttccgctac
gacgaggcgagccagacgctggaaggcgaggaatcgggcgacacctatgcgcggggccag
ttgctgccgctgcgcctggtggaggccaatccggtcagcggcgcgctgcgcttcgaactg
cccgagggcgtcaaccacatgccgatgcgccatgatcgtccgcgcaaggaccggcgcatc
gtcggcaagcgcggccgcccggcgaatgtccgccatcagggccggcggcgctga
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