Sphingomonas sanxanigenens: NX02_06660
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Entry
NX02_06660 CDS
T03929
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NX02_06660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssan03021
]
NX02_06660 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_06660 (rpoB)
Enzymes [BR:
ssan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NX02_06660 (rpoB)
Transcription machinery [BR:
ssan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NX02_06660 (rpoB)
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NX02_06660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
B
Motif
Other DBs
NCBI-ProteinID:
AHE53062
UniProt:
W0A9A8
LinkDB
All DBs
Position
1331230..1335384
Genome browser
AA seq
1384 aa
AA seq
DB search
MATKAAPASGTAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSTGYVSGLEKTL
RSVFPIRDFAGTAELDFVHYELEEPKYDTDECRQRGITYAAPMRVTLRLIVFEVDADTET
RSVLDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHASGKYL
FAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNSEDILNHFYNTVIFV
RGEGGWQVPYVVENWRGQKPTFDVVDANSGEVVFPAGTKISPRAANKAGRDGLQMLLIPT
EEIFGRYSAYDLIDESTGRIYIEAGDEVSAENLEMLDKAGIDRIELLDIDHVNTGPWIRN
TLKADKAEERDHALADIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLNMRL
ELDAEDTVTTLRTEDILAVVKTLVGLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLL
RMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRR
VSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIET
PYRKVIDGKVTQEVVYLSAMEEAKHTIAQANAELTADHGFAEDLISAREAGEFLMAPRDH
ITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETVA
RDSGAAIAARRSGIVDQVDATRIVIRATGDVEAGKSGVDIYTLMKFQRSNQNTCINQRPL
VKVGDTVNGGDIIADGPSTELGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTS
IHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPK
GESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIER
EEIDRLTKDREDERGILNRATFNRLREMLIGQVATAAPKGVRKGVEIDEQLLGEVERHDW
WKFAVQDDARQSDLEAVKAQYDEAVGLIVRKFEDRVEKLQRGDELPPGVLKMVKVFVAVK
RKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNVGQIFETHL
GWAARGLGRQITEALETWRENGGSAAGTPPEAVRERLKTVYGEDYHAEIDARSTDEVVEL
AQNLKNGVPMATPVFDGARESDVAHMLKLAGLDESGQVELFDGRTGDQFDRKVTVGYIYM
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELNALSEIEDDDVLP
EAAE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcagctcccgcttccggcaccgcgaagaagcgcatccgcaaggttttc
ggcaacatccacgaagtggtgcagatgccgaacctgatcgaggtgcagcgcgaatcctac
gaacagttcctgcgctccgacccctcgaccggctatgtgtcaggcctggaaaagacgctg
cgcagcgtgtttccgatccgcgatttcgccggcaccgccgaactggacttcgtccattac
gagctcgaggagccgaagtacgacacggacgaatgccgccagcgcggcatcacctatgcg
gcgccgatgcgcgtcacgctgcgcctgatcgtcttcgaggtcgacgccgacaccgaaacc
cgctccgtgctcgatatcaaggagcaggacgtctacatgggcgacatgccgctgatgacg
cagaacggcacgttcatcgtcaacggcaccgagcgcgtgatcgtcagccagatgcaccgt
tcgcccggcgtgctgttcgaccatgaccgcggcaagacccatgcctcgggcaaatatctc
ttcgctgcgcgggtgatcccgtatcgcggctcgtggctggacttcgagttcgacgccaag
gacatcgtcaacgtccggatcgaccgcaagcgcaagctgccggtgacggcgctgctctat
gcgctcggcctgaactccgaagacatcctcaaccacttctacaacaccgtcatcttcgtg
cgcggcgagggcggctggcaggttccctatgtcgtcgagaactggcgcggccagaagccg
acgttcgacgtcgtcgacgcgaactcgggcgaggtcgtgttcccggcgggcaccaagatc
agcccgcgcgcggccaacaaggccggccgcgacggcctgcagatgctgctgatcccgacc
gaggaaatcttcggccgctacagcgcctatgacctgatcgacgagtcgaccggccgcatc
tacatcgaggcgggcgacgaggtttcggccgagaatctcgaaatgctcgacaaggccggc
atcgaccggatcgagctgctcgacatcgaccatgtcaacaccggcccctggatccgcaac
acgctgaaggcggacaaggcggaggagcgcgaccatgcgctcgccgacatctatcgcgtg
atgcgccccggcgagccgccgacgaaggaaaccgccgaggcgctgttcgccggcctgttc
ttcgatccggagcgctacgacctctcggccgtcggccgcgtgaagctcaacatgcgcctc
gagctcgacgccgaggacaccgtgaccacgctgcgcaccgaggatatcctcgcggtcgtc
aagacgctggtcggcctcaaggacggcaagggcgagatcgacgacatcgacaatctcggc
aaccgccgcgtgcgttcggtgggcgagctgctggagaaccagtatcgcgtcggcctgctc
cgcatggagcgcgccgtgaaggagcgcatgtcgtcggtcgacgtgtcgacggtgatgccg
aacgacctgatcaacgcgaagcccgcggtcgccgcggtgcgcgaattcttcggctcgtcg
cagctctcgcagttcatggaccagaccaacccgctctccgaagtgacgcacaagcgtcgc
gtctcggcgctcgggccgggcggtctcacccgcgagcgcgcgggcttcgaggtccgcgac
gtccacccgacccactatggccgcatctgcccgatcgaaacgccggaaggcccgaacatc
ggcctgatcaacagcctggcgtcgttcagccgcgtcaacaagtacggcttcatcgagacg
ccgtaccgcaaggtcatcgacggcaaggtcacgcaggaagtcgtctatctgtcggcgatg
gaagaggccaagcacacgatcgcgcaggcgaacgccgagctgaccgcggaccatggcttc
gccgaggacctgatctcggcgcgcgaggccggcgaattcctgatggcgccgcgcgatcac
atcaccctgatggacgtgagccccaagcagctcgtgtcggtcgcggcgtcgctgatcccg
ttcctggaaaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcg
gttccgctcgtccgcgccgaggcgccgttcgtcggcaccggcatggaagagacggtggcg
cgtgactcgggtgccgcgatcgcggcgcgccggtcgggcatcgtcgaccaggtcgacgcg
acccgcatcgtcatccgcgcgaccggcgacgtcgaggccggcaagtccggcgtcgacatc
tacacgctgatgaagttccagcgttcgaaccagaacacctgcatcaaccagcgtccgctg
gtgaaggtgggcgacaccgtgaacggcggcgacatcatcgccgacggtccgtcgaccgag
ctgggcgagctggcgctgggccgcaacgcgctcgtcgcgttcatgccctggaacggctac
aactacgaggactccatcctgatctccgagcggatcgtgaaggacgacgtcttcacctcg
atccatatcgaggagttcgaggtgatggcccgcgacaccaagctcgggccggaagacatc
acccgcgacatcccgaacgtgggtgaagaggcgctgcgcaacctcgacgaggcgggcatc
gtctatatcggcgccgaggtggagccgggcgacatcctggtcggcaagatcacgccgaag
ggcgaaagcccgatgacgccggaagagaagctgctccgtgcgattttcggcgaaaaggcc
agcgacgtgcgcgacacctcgctgcgtctgcccccgggcgtcgccggcacggtcgtcgag
gtgcgcgtgttcaaccgccacggcatcgacaaggacgagcgcgcgatggcgatcgagcgc
gaggagatcgaccgcctgaccaaggaccgcgaggacgagcgcggcatcctcaaccgggcg
accttcaatcgcctgcgcgagatgctgatcggccaggtcgccacggcggcgcccaagggc
gtgcgcaagggcgtcgagatcgacgagcagctgctcggcgaggtcgagcgtcatgactgg
tggaagttcgccgttcaggacgatgcccgccagtcggacctggaagcggtcaaggcgcag
tatgacgaggcggtcggcctgatcgtccgcaagttcgaggatcgcgtcgagaagctgcag
cgcggcgacgagctgccgccgggcgtgctgaagatggtcaaggtgttcgtcgcggtgaag
cgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatcagc
cgcatcctgccggccgaggacatgccgttcctggcggacggtaccccggtcgacatcgtg
ctcaacccgctgggcgtgccgagccgcatgaacgtcgggcagatcttcgagacgcatctg
ggctgggccgcgcgcggcctcggccgccagatcaccgaggcgctggagacgtggcgcgag
aatggcggcagcgctgccggcaccccgccggaagcggtgcgcgagcgcctgaagacggtc
tatggcgaggattatcacgccgagatcgacgcccggtccaccgacgaggtggtcgagctg
gcgcagaacctgaagaacggcgtgccgatggcgacgccggtgttcgacggggcgcgcgag
agcgacgtggcgcacatgctcaagctggcgggtctcgacgagagcggccaggtggagctg
ttcgacggccgcaccggcgatcagttcgatcgcaaggtgacggtgggctacatctacatg
ctgaagctgcaccacctggtcgacgacaagatccacgcgcgttcgatcgggccgtacagc
ctcgtcacccagcagccgctgggcggcaaggcccagttcggcggccagcgcttcggcgag
atggaggtgtgggcgctccaggcctatggcgccgcctacacgctgcaggagatgctgacg
gtgaagtcggacgacgtgatcggccgcaccaaggtctacgaggcgatcgtcaagggtgac
gacacgttcgaggccggcattcccgagagcttcaacgtgctcgtcaaggaaatgcggtcg
ctgggtctcaacgtcgagctcaatgcgctcagcgagatcgaggacgacgacgtgctgccc
gaggctgccgagtaa
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integrated database retrieval system
